Glyma02g40340 - SoyBase

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Report for Sequence Feature Glyma02g40340

Feature Type:	gene_model
Chromosome:	Gm02
Start:	45574503
stop:	45580600
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g40340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58300	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr5:23572821-23574871 FORWARD LENGTH=654	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF779	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_G7K0V8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7K0V8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JHM8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHM8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g40340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g40340

Paralog	Evidence	Comments
Glyma14g38630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g40340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g237000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g40340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g40340

Limit To All Plant Sequences

>Glyma02g40340.1   sequence type=CDS   gene model=Glyma02g40340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGGTTACTTTGAATTCAAGTGTCAATATCTTATACCATACAACCAAAAAAATATCCATGAAGTTCTACTCCTCCCAAGTGCATCGTTTCCTTTTCATCATTGTTATTCTTTTCCCCCTGGCTATTGCTGACTTAAGTTCTGACAAGCAAGCCCTTCTGGATTTTGCTGCTGCTGTCCCCCATCGCCGTAACCTTAAGTGGAATCCAGCTACCCCAATCTGTTCATCTTGGGTAGGCATCACTTGCAATCCAAATGGCACTCGTGTTGTTTCTGTCCGGCTCCCTGGAATTGGACTAGTTGGCACCATCCCTGCCAATACACTTGGCAAGATTGACTCACTCAGAAATATCAGCCTCCGAGCCAACTTACTCAGTGGAAGTCTTCCTCCTGATATTACGTCTCTTCCTTCTCTACAATATCTCTACCTTCAGCATAATAACCTTTCTGGTAGCGTACCTACCTCGTTGTCCACCCGCCTCAATGTACTTGATTTGTCATACAATTCCTTCAGTGGTGCTATTCCAAAGACATTACAAAACATAACACAACTAATTAAGTTGAACCTCCAGAACAACTCCCTATCTGGACAGATACCAAATCTCAATGTCACTAAGCTCAGGCACTTGAATTTAAGCTACAACCATTTGAATGGCTCTATCCCTGATGCTCTTCAGATTTTCCCGAATTCTTCCTTTGAGGGTAACTCTCTATGTGGATTACCTCTAAAGTCATGCTCTGTAGTCTCCTCTACACCTCCATCAACTCCTGTCTCACCATCCACTCCTGCAAGACACAGCTCCAAAAGTAAACTGAGTAAGGCAGCTATCATTGCAATTGCAGTTGGTGGGGGTGTGCTATTGCTTTTAGTAGCTCTCATCATTGTTCTTTGCTGTTTAAAGAAAAAAGATGATAGAAGCCCCAGCGTAACTAAAGGCAAGGGTCCTAGTGGTGGGAGAAGTGAGAAGCCGAAAGAAGAGTTTGGAAGTGGGGTGCAAGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAGGGCAGTTCTTATAATTTTGACCTTGAGGATTTGCTGAGAGCTTCAGCTGAAGTTCTTGGAAAGGGTAGTTATGGTACTGCGTATAAGGCTATATTGGAGGAGTCAACAACAGTTGTGGTGAAAAGGTTGAAGGAAGTTGTGGTAGGCAAAAGGGAATTTGAACAGCAGATGGAAATTGTGGGAAGGGTTGGACATCACCCAAATGTTGTGCCCCTTCGTGCTTATTATTATTCTAAGGACGAGAAGCTCTTGGTTTATGACTACATCCCAAGTGGCAATCTATCTACCCTCTTGCATGGTAACAGGGCAAGTGGAAGGACTCCATTAGATTGGAATTCCCGAATAAAAATCTCTGTTGGAATTGCCAGAGGAATTGCTCACATACATTCTGTTGGCGGTCCAAAATTCACGCACGGAAATGTCAAATCCTCGAATGTCCTCCTCAACCATGATAATGATGGCTGCATTTCTGATTTTGGCCTGACCCCGCTTATGAATGTTCCTGCAACCCCTTCTAGAGCCGCAGGTTATCGCGCTCCTGAGGTGATTGAAACCCGAAAGCACACCCATAAATCAGATGTGTACAGTTTCGGAATCCTCCTTCTAGAAATGCTTACTGGGAAGGCACCACAACAGTCTCCAGGACGCGATGACATGGTTGATCTCCCAAGGTGGGTCCAGTCTGTTGTTAGGGAAGAGTGGACGGCTGAGGTTTTCGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAGGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTTCCAGATATGAGGCCTAGCATGGATGAAGTAGTGAGAATGATTGAAGAGATCCGGCTATCTGACTCAGAAAACCGGCCATCTTCAGAAGAGAATAGATCCAAGGAGGAATCAGCTGCTCAAACTCCATAA

Predicted protein sequences of Glyma02g40340

Limit To All Plant Sequences

>Glyma02g40340.1   sequence type=predicted peptide   gene model=Glyma02g40340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVTLNSSVNILYHTTKKISMKFYSSQVHRFLFIIVILFPLAIADLSSDKQALLDFAAAVPHRRNLKWNPATPICSSWVGITCNPNGTRVVSVRLPGIGLVGTIPANTLGKIDSLRNISLRANLLSGSLPPDITSLPSLQYLYLQHNNLSGSVPTSLSTRLNVLDLSYNSFSGAIPKTLQNITQLIKLNLQNNSLSGQIPNLNVTKLRHLNLSYNHLNGSIPDALQIFPNSSFEGNSLCGLPLKSCSVVSSTPPSTPVSPSTPARHSSKSKLSKAAIIAIAVGGGVLLLLVALIIVLCCLKKKDDRSPSVTKGKGPSGGRSEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVGRVGHHPNVVPLRAYYYSKDEKLLVYDYIPSGNLSTLLHGNRASGRTPLDWNSRIKISVGIARGIAHIHSVGGPKFTHGNVKSSNVLLNHDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGILLLEMLTGKAPQQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPSMDEVVRMIEEIRLSDSENRPSSEENRSKEESAAQTP*

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