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Report for Sequence Feature Glyma03g03815

Feature Type:gene_model
Chromosome:Gm03
Start:3670319
stop:3673044
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g03815
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G11530AT Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 34 | chr4:6987093-6989599 FORWARD LENGTH=669 SoyBaseE_val: 6.00E-29ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF683Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_C5Z6B5UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein Sb10g006630 n=1 Tax=Sorghum bicolor RepID=C5Z6B5_SORBI SoyBaseE_val: 5.00E-33ISS
UniRef100_Q84QD9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Avr9/Cf-9 induced kinase 1 n=1 Tax=Nicotiana tabacum RepID=Q84QD9_TOBAC SoyBaseE_val: 2.00E-27ISS

Expression Patterns of Glyma03g03815
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g03815 not represented in the dataset
Glyma03g03815 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g03815
ParalogEvidenceComments
Glyma01g33181 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g03815 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g032300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g03815
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g03815
>Glyma03g03815.1   sequence type=CDS   gene model=Glyma03g03815   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCAACAACAAACCTTGTTGAGTTTTCATCTCAGAATTTGGAAGCATGTACCAACAATTTCAGTCAGAGCAATCTCATTGGCTTGACAAAGTTTGGTAGATTGTATAGAGGCATCCTTGAAGGTCAACATGTAGTAGTGAAGATATGGGATGGTGAAAGAATGGAACAGTTAAGTTCCAAATATGATGATGAGAATTTGATTATCAAAGAGGAAGTAAAATTTTGGACTAATCCAACATTAAGAGGTTACCCCAATTTGGTGAAGTTGATTGGTTATACTTGGGAGAGAGATGCAAAGGGACTTGTTTATGATCTCAATCCACTTGATACTTTGGATAACGTAATAATGAAAGATAACCTGAATTGGCTTCAGAGAATAAATGTAATTCATGAACTTGCAAAGCTCCTGAAATTCATTCATGACCAGGAAAAGCAAAATATGGTGTTGAATATCAGTGCATCTCATATTCTTCTCGACAAGGATTACAAGCCAAATTTTATTGATTTGGTGTTGCTTAGTGAAGTGACAATGCTAAGGGAACAACTAACAATGTCAACTAGCTACATCAATCCTTATTTTTCTCTAAGGGGTGGTGAATGGGATAGAAGCTGTGAAGTGTTCTCATTTGGCATTGTTTTGCTTGAACTAATAACCAAAAGAGTTTCAGTCATTGGGAAGAGAGAACATGCAAGCATAAACTTGGACGGTGTGGTTCATATTTGGGCCAAGAAAGAATACAAGCCAAATTGTTCTCTTGTCCATGAAACTTTGCAGGAAGATTGGTGTTACTGTGCTGAAGATGGTGTTTCAATAACTTTATTGGCATTGCAATGCATAGAATTTTTTCCAGCAAACCGTCCAACAATGAGGGATGTCTTGCACAGGCTAGATAATCTTTTGGTGTTACAACGTATGGCTGATGCTAGAGCAACCAAAAGGGAAAAGCAACTCATTTCATCCTGA
Predicted protein sequences of Glyma03g03815
>Glyma03g03815.1   sequence type=predicted peptide   gene model=Glyma03g03815   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPTTNLVEFSSQNLEACTNNFSQSNLIGLTKFGRLYRGILEGQHVVVKIWDGERMEQLSSKYDDENLIIKEEVKFWTNPTLRGYPNLVKLIGYTWERDAKGLVYDLNPLDTLDNVIMKDNLNWLQRINVIHELAKLLKFIHDQEKQNMVLNISASHILLDKDYKPNFIDLVLLSEVTMLREQLTMSTSYINPYFSLRGGEWDRSCEVFSFGIVLLELITKRVSVIGKREHASINLDGVVHIWAKKEYKPNCSLVHETLQEDWCYCAEDGVSITLLALQCIEFFPANRPTMRDVLHRLDNLLVLQRMADARATKREKQLISS*






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