Glyma03g03870 - SoyBase

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Report for Sequence Feature Glyma03g03870

Feature Type:	gene_model
Chromosome:	Gm03
Start:	3766640
stop:	3769398
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g03870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18570	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr2:8063429-8064841 FORWARD LENGTH=470	SoyBase	E_val: 2.00E-122	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_I1JKV2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JKV2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q40287	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Anthocyanidin 3-O-glucosyltransferase 5 n=1 Tax=Manihot esculenta RepID=UFOG5_MANES	SoyBase	E_val: 1.00E-124	ISS

Expression Patterns of Glyma03g03870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g03870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g032800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g03870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g03870

Limit To All Plant Sequences

>Glyma03g03870.1   sequence type=CDS   gene model=Glyma03g03870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATCTCAAACAATAATCATCATGCTCTAGTCCTTGTTTCACCAGGAATGGGTCACATAATCCCTGCCCTAGAACTTGCCAAGCGTTTAGTCACTCACAAAATCATTTCCAAACTCACCTTCTTTTATGGTTCAATCAAAACCTCTACTCCATCAAAAGCTGAGACACAAATTCTCCAATCAGCCATAAAGGAAAACCTTTTCGATCTAATTCAACTCCCCCCTATTGATCTCACCATCCATGTTAGTCCTCATGACACCTTAGAAACCAAACTAGCAATTATAATGCATGAAATCCCACTACTTTTTATGTCCACAATATCCACCATGAACCTCAACCCAACCATGATCATCACTGACTTCTTCTTCAGCCAAGTTATACCTCTAGCCAAAAACCTAAACCTACCCATATTTGCTTTTGCACCAACCAATTCATGGCTCGTCGCACTTGGTCTTCACACCCCCACTTTGGATAAAGAAATAGAAGGAGAATATAGCAATGAAAGCAAACCCATCCCAATCCCAGGTTGCAAATCCGTTCACCCCCTTGATTTGATTCCTATGATGCATGACAGGACACAAAGGATCTACCATGAATTTGTTGGCGCGTGTGAAGGGGCAGCACTTGCTGATGGGATCTTTGTTAACACGTTTCATGAGTTGGAGCCAAAGACACTTGAAGCACTTGGTAGTGGACACATCATTGCCAAGGTGCCCGTGTACCCGGTTGGGCCTATAGTAAGGGATCAAAGAGGCCCTAATGGTAGCAATGAGGGAAAAATAAGTGATGTTTTTGAGTGGCTGGACAAACAAGAAGAAGAGTCTGTTGTGTATGTGTCACTTGGGAGTGGATACACAATGTCATTTGTGGAAATGAAAGAGATGGCTTTGGGGTTGGAGCTGAGTGGAAATAAATTTGTTTGGTCTGTGCGTCCACCTGTCACCAAAGCTGGCACCGGCAACTATCTCACAGCAGGTGCACCTCTTGGAGAAACCGGAACTACCCTTGGGTCTAATAATCAACCATCAAATTCTTTTCCTGATGAGTTCTACCGCATACAAACCAATGGAATTGTGATCACAGATTGGGCACCACAATTGGATATTTTGAAGCACCCATCTATTGGTGGTTTTGTGTCTCATTGTGGGTGGAACTCATTAATAGAGAGTGTTTCATGTGGGGTGCCAATAATTGGATTGCCTCTTTTTGCAGAGCAAATGATGAATGCTACGATGCTAATGGAGGAAGTTGGCAATGCAATTCGAGTAGAGGTGTCACCATCTACCAATATGGTTGGAAGGGAGGAGTTATCAAAAGCAATAAGGAAGATAATGGATAAGGATGACAAAGAAGGGTGTGTAATGAGGGAAAGGGCTAAAGAGCTTAAGCACTTAGCAGAAAGAGCTTGGTCTCATGATGGTCCTTCTTATTTAGCACTTTCAAAAATCACTCACTCAAATGGGATGTGA

Predicted protein sequences of Glyma03g03870

Limit To All Plant Sequences

>Glyma03g03870.1   sequence type=predicted peptide   gene model=Glyma03g03870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISNNNHHALVLVSPGMGHIIPALELAKRLVTHKIISKLTFFYGSIKTSTPSKAETQILQSAIKENLFDLIQLPPIDLTIHVSPHDTLETKLAIIMHEIPLLFMSTISTMNLNPTMIITDFFFSQVIPLAKNLNLPIFAFAPTNSWLVALGLHTPTLDKEIEGEYSNESKPIPIPGCKSVHPLDLIPMMHDRTQRIYHEFVGACEGAALADGIFVNTFHELEPKTLEALGSGHIIAKVPVYPVGPIVRDQRGPNGSNEGKISDVFEWLDKQEEESVVYVSLGSGYTMSFVEMKEMALGLELSGNKFVWSVRPPVTKAGTGNYLTAGAPLGETGTTLGSNNQPSNSFPDEFYRIQTNGIVITDWAPQLDILKHPSIGGFVSHCGWNSLIESVSCGVPIIGLPLFAEQMMNATMLMEEVGNAIRVEVSPSTNMVGREELSKAIRKIMDKDDKEGCVMRERAKELKHLAERAWSHDGPSYLALSKITHSNGM*

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