Glyma03g22740 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g22740

Feature Type:	gene_model
Chromosome:	Gm03
Start:	29161439
stop:	29173921
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g22740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21630	AT	Annotation by Michelle Graham. TAIR10: Sec23/Sec24 protein transport family protein \| chr2:9250346-9253829 FORWARD LENGTH=761	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0030127	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: COPII vesicle coat	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1986	KOG	Vesicle coat complex COPII, subunit SEC23	JGI		ISS
PTHR11141	Panther	PROTEIN TRANSPORT PROTEIN SEC23	JGI		ISS
PF00626	PFAM	Gelsolin repeat	JGI		ISS
PF04810	PFAM	Sec23/Sec24 zinc finger	JGI		ISS
PF04811	PFAM	Sec23/Sec24 trunk domain	JGI		ISS
PF04815	PFAM	Sec23/Sec24 helical domain	JGI		ISS
PF08033	PFAM	Sec23/Sec24 beta-sandwich domain	JGI		ISS
UniRef100_G7LEA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein transport protein SEC23 n=1 Tax=Medicago truncatula RepID=G7LEA6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JMB0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMB0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g22740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g22740

Paralog	Evidence	Comments
Glyma16g09225	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g22740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g091800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g22740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g22740

Limit To All Plant Sequences

>Glyma03g22740.1   sequence type=CDS   gene model=Glyma03g22740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAATTTCTGGATCTCGAATCCCAAGACGGCGTTCGAATGCCGTGGAACGTGATCCCCGGCACGAAGCAGGACGCCCAAAACGCCGTCGTCCCCATCTCCGCCGTCTACACTCCGATAAAGCACTTCCCCTCGATGCCGGTCCTCAACTACTCCCCTCTCCGGTGCCGCACGTGCCGCTCCGTCCTCAACCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCCCCTCACTACTCCTCCATCTCCGACGACTCCCTCCCCGCCGAGCTCTTCCCGCAGTACACCACCGTCGAGTACAACTCCGACGCCGCCGTGGGCCCCACTTATAATAACCCCTCCGTACCCCCTGTTTTCCTCTTTGTCGTCGACACGTGCGTCATCGAAGAGGAGATCGGGTTCCTGCGCTCCGCGCTCGCGCAGGCGGTTGAGCTTTTGCCCGAGAACTCGCTCGTTGGACTCATTACGTTTGGAACGTTTGTTCATGTTCACGAATTAGGGTTTGGTGCGGTGCCGAAGACTTATGTTTTCAAGGGATCTAAGGATTTGACGAAGGACCAGCTGCTCGAGCAGATGAGTTTTTTCGCGAAGAAGCCGCGCCCGGCGGTCGGCGTGGTGGCTGGCGCGAGGGACGGGCTCTCCCCGGAAAGTATTTCGAGGTTCCTCGTGCCGGCGTCGGAGTGCGAGTTCACTATCAATTCGGTATTGGAGGAGCTGCAGAAGGATCCTTGGGCGGTGCCGGCGGATCAGCGTGCTGCTCGGTGCACCAGCACGGCACTGAGTATCGCGGCGGGTTTGTTGGGGGCATGTGTCCCTGGCTCTGCTGCGAGAATAATGGCATTTATTGGAGGACCGGCTACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCTCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTGCATCAAGGTCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGGTTGGAATTGCTGAACTTAAAACTGCTGTTGAAAGAACCGGAGGTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTATTTTCCAATCGGGTGATTATGATTTGGGCCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTACTATTGGTCAAGGGGGTACAAGTGCATGGAAAATGTGTGGCCTTGACAAATCCACATCATTGTGTCTATTTTTTGACGTTGTGAGGAAGGAAACTCCTGATGCAACAATCCAGTCCACAAGCAATCAATTTTACTTCCAATTCTTGACTTATTATCAGAATAACGGTGGGCAAATGAGATTACGGGTTACGACCCTTTCACGTAGATGGGTTGCTGGACCTGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCCTTCAAAATGGAAACAGAGGCCGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGTTCTCGGTTTGGGGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAGTTTGTTCAGGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTAAACCGTGAAAATGTTGCGAATTCTGTTGTCATGGTTCAGCCTTCGTTGATTTCTTATTCATTCCATGCTGGTCCTGAACCAGCTCTTCTTGATGTTGCAGCCATTGCGGCTGATAAGATCCTGCTTTTGGATTCATTTTTCACAGTTGTCATTTTTCATGGTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCAGAACATCAGGCATTTGCTCAATTGCTACGAGCTCCTCATGATGATGCTGATTTAATTATAAAGGAGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAATCTTACAATCCCGGAGGGGATATTATCTTTACGGATGATGTTAGCTTTGATGTCTTCCTGGATCACTTACAGAGATTAGTAGTTCAATAA

Predicted protein sequences of Glyma03g22740

Limit To All Plant Sequences

>Glyma03g22740.1   sequence type=predicted peptide   gene model=Glyma03g22740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEFLDLESQDGVRMPWNVIPGTKQDAQNAVVPISAVYTPIKHFPSMPVLNYSPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYSSISDDSLPAELFPQYTTVEYNSDAAVGPTYNNPSVPPVFLFVVDTCVIEEEIGFLRSALAQAVELLPENSLVGLITFGTFVHVHELGFGAVPKTYVFKGSKDLTKDQLLEQMSFFAKKPRPAVGVVAGARDGLSPESISRFLVPASECEFTINSVLEELQKDPWAVPADQRAARCTSTALSIAAGLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHKCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRIFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVTIGQGGTSAWKMCGLDKSTSLCLFFDVVRKETPDATIQSTSNQFYFQFLTYYQNNGGQMRLRVTTLSRRWVAGPESIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMVQPSLISYSFHAGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLRAPHDDADLIIKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTESYNPGGDIIFTDDVSFDVFLDHLQRLVVQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain