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Report for Sequence Feature Glyma03g28271

Feature Type:gene_model
Chromosome:Gm03
Start:36141004
stop:36148440
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g28271
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80270AT Annotation by Michelle Graham. TAIR10: PENTATRICOPEPTIDE REPEAT 596 | chr1:30181265-30183331 FORWARD LENGTH=596 SoyBaseE_val: 1.00E-157ISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF113Panther SUBFAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7KQR8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KQR8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023379A2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023379A2 related cluster n=1 Tax=unknown RepID=UPI00023379A2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g28271
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g28271 not represented in the dataset
Glyma03g28271 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28271
ParalogEvidenceComments
Glyma19g31020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28271 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g127100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g28271
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g28271
>Glyma03g28271.1   sequence type=CDS   gene model=Glyma03g28271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCGGACTTTATTGGCTAACTGTGTCAGTCAGAACAATGTGAAGAAAGCAGAGGAAGTTTTTAGTAAAATGAAGGACTTGGATTTGCCTATTACAGTATTTACTTGCAATGAGTTGCTATTTCTGTATAAGAGGAATGACAAGAAGAAAATAGCTGATTTGTTATTGTTGATGGAAAATGAGAAGATCAAACCTTCTCGTCATTCTTATTCAATCTTAATAGACACAAAAGGCCAGTCCAAAGATATTGGTGGAATGGATCAAATTGTTGATAGAATGAAGGCTCAAGGCATTGAACCAGACATCAACACACAGGCTGTTTTGGCTAGGCATTACATCTCAGCTGGGCTTCAAGATAAAGTTGAAACTTTGTTGAAGCAGATGGAAGGTGAAAACTTAAAACAGAATCGGTGGCTATGCCGAATTTTGCTTCCCCTCTATGCAAACCTAGGAAAGGTGGATGAAGTGGGAAGAATTTGGAAGGTCTGTGAGACAAACCCTCGGTATGATGAGTGTCTGGGGGCAATTGAAGCTTGGGGAAAGTTGAATAAAATTGATGAAGCAGAGAAAGTTTTTGAGATGATGGTAAAGAAATGGAAGCTTTCTTCCAAGACCTGTTCCATACTGCTGAAGGTTTATGCAAATAATGAGATGCTAATGAAGGGTAAGGATCTTATGAAGCGAATCGGAGATGGTGGGTGCCGAATAGGCCCATTGACCTGGGACACAATAGTGAAACTTTATGTCCAAACTGGGGAAGTAGAGAAGGCAGATTCTGTTCTTCAGAAGGCAGCCCAGCAGAGCCAGATGAAGCCAATGTTTTCTACCTACCTAACTATTTTGGAGCAGTATGCTAAGAGGGGTGACATCCATAACTCGGAGAAGATTTTCCTTAGAATGAAACAAGCTGATTATACATCTAAAGCAAAGATGTACCAAGTTCTAATGAATGCCTATATAAATGCAAAGGTTCCAGCCTATGGGATTAGGGACAGGTTGAAAGCTGATAGCATATATCCCAATAGAAATTTGGTAAACCAATTGGTTCAAGTTGATGGATTTAGGAAGAATCCAGTCTGCGATTTGCTTGATTGA
Predicted protein sequences of Glyma03g28271
>Glyma03g28271.1   sequence type=predicted peptide   gene model=Glyma03g28271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRTLLANCVSQNNVKKAEEVFSKMKDLDLPITVFTCNELLFLYKRNDKKKIADLLLLMENEKIKPSRHSYSILIDTKGQSKDIGGMDQIVDRMKAQGIEPDINTQAVLARHYISAGLQDKVETLLKQMEGENLKQNRWLCRILLPLYANLGKVDEVGRIWKVCETNPRYDECLGAIEAWGKLNKIDEAEKVFEMMVKKWKLSSKTCSILLKVYANNEMLMKGKDLMKRIGDGGCRIGPLTWDTIVKLYVQTGEVEKADSVLQKAAQQSQMKPMFSTYLTILEQYAKRGDIHNSEKIFLRMKQADYTSKAKMYQVLMNAYINAKVPAYGIRDRLKADSIYPNRNLVNQLVQVDGFRKNPVCDLLD*






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