Glyma03g28310 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g28310

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36177383
stop:	36183648
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68060	AT	Annotation by Michelle Graham. TAIR10: microtubule-associated proteins 70-1 \| chr1:25511392-25514226 REVERSE LENGTH=622	SoyBase	E_val: 0	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010051	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0010005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule, transverse to long axis	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
PF07058	PFAM	Myosin II heavy chain-like	JGI		ISS
UniRef100_B9SJ29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myosin heavy chain, clone, putative n=1 Tax=Ricinus communis RepID=B9SJ29_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023379A3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023379A3 related cluster n=1 Tax=unknown RepID=UPI00023379A3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28310

Paralog	Evidence	Comments
Glyma19g31040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g127500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g28310

Limit To All Plant Sequences

>Glyma03g28310.2   sequence type=CDS   gene model=Glyma03g28310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCAGCCACATTGGGAATGCCGGAGACGCCGACGCGAAGGCCTTGAAGGGTCGCCCCAAGAAGCCCTCCGACGACTTCATCTCCCTCTTCCACGGCTCCGATCCGGAGAAAAGGGCAACACTGGCTGCACAATTTGCTGCCGAAGCCACACTTCGAACGGTTCGTGCTGCACAGAAAGACGATGAAATGCCTCCTATTGAAGCTATTATTGCACCCCTGGAGGCAGAACTCAAGCTTGCTAGGATGGAGGTGGCAAAGCTGCAGGATGACAACAGAGCACTGGATCGGCTAACCAAATCGAAGGAGGCTGCTCTTCTTGAGGCTGAGAGAACTGTTCAGATTGCTTTGGCAAAAGCATCCTTGGTTGATGATCTGCAAAACAAAAATCAAGAGTTAATGAAACAGATTGAAATATGCCAGGAGGAGAACAAAATCTTGGACAAAATCCTTCGGCAAAAGGTTGCTGAAGTTGAAAAACTAACTCAAACTGTTCGTGAGCTTGAAGAGGCTGTCTTGGCTGGTGGGGCTGCTGCTAATGCTGTCCGTGATTACCAGCGTAAAGTGCAAGAGATGAATGAGGAAAGGAAAATTTTGGAGCGGGAAGTAGCTCGTGCCAAAGTTACTGCAAACAGGGTTGCGACTGTAGTTGCAAATGAGTGGAAAGATGCTAATGATAAAGTGATGCCAGTGAAGCAGTGGCTAGAAGAAAGAAAATTTTTTCAGGGTGAAATGCAACAATTACGTGATAAATTGGCTATAGCTGAGCGCACTGCAAAGGCAGAGGCTCAAATGAAGGAAAAATATCAATTGCGCTTCAAAGTTTTGGAAGAAAGGGTTAAGACATCTAATGGTAATTCCAAATTCACTGTATCAGATGGAAGAAACATTGGCACTGGGCCTTCACGACGACAATCTTTTGGTGAAGCTGAGAGTCTCTCTGCCTCTTCTTCCAATGGATATCAATCGAGGAAAAACTCAATTTCAAGATCAGGGTCTCTAAGATCAAACAGTGCTAATGTGCTACTAAAACATGCCAAACTTTCATCGAGATCGTTCGATGGTGGTAGTAGAAACCTGGAGAGAGAGAGGCCAACTTCAGATGCAAATGGGCTAGATAACATGCCAACAAACTACAATAATCAGACCATCACCAGGGAAACAATTACTACACATGAGGAGAGTGCAAATGGTACTCCAGTCGAAAAATCTAAATCAGAAAATGAAGACTATGTTTCAGGAATGCTGTATGACATGTTGCAAAAAGAGGTTATATCTCTGAGGAAGGCTTGTCATGAAAAAGACCAGACTCTTAAAGACAAGGATGATGCAATAGAGATGTTGGCAAAGAAGGTTGATACATTGAGCAAGGCTATGGAAGTTGAGGCCAGAAAAATGCGTAGGGAAGTTGCTTCTATGGAAAAGGAGGTTGCCGCAATGCGGATTAGCAAGGAACATGATCATAGGGCATGGCAAGCAAGTGCTCCTAGGGGGGCTGTAAATTCCCAGTCAATTTCTTCCAGGAGTGCACGTAACTTTTAG

Predicted protein sequences of Glyma03g28310

Limit To All Plant Sequences

>Glyma03g28310.2   sequence type=predicted peptide   gene model=Glyma03g28310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSHIGNAGDADAKALKGRPKKPSDDFISLFHGSDPEKRATLAAQFAAEATLRTVRAAQKDDEMPPIEAIIAPLEAELKLARMEVAKLQDDNRALDRLTKSKEAALLEAERTVQIALAKASLVDDLQNKNQELMKQIEICQEENKILDKILRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKILEREVARAKVTANRVATVVANEWKDANDKVMPVKQWLEERKFFQGEMQQLRDKLAIAERTAKAEAQMKEKYQLRFKVLEERVKTSNGNSKFTVSDGRNIGTGPSRRQSFGEAESLSASSSNGYQSRKNSISRSGSLRSNSANVLLKHAKLSSRSFDGGSRNLERERPTSDANGLDNMPTNYNNQTITRETITTHEESANGTPVEKSKSENEDYVSGMLYDMLQKEVISLRKACHEKDQTLKDKDDAIEMLAKKVDTLSKAMEVEARKMRREVASMEKEVAAMRISKEHDHRAWQASAPRGAVNSQSISSRSARNF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain