Glyma04g41420 - SoyBase

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Report for Sequence Feature Glyma04g41420

Feature Type:	gene_model
Chromosome:	Gm04
Start:	47249948
stop:	47252989
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g41420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49240	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr3:18256086-18257975 FORWARD LENGTH=629	SoyBase	E_val: 0	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010564	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048825	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon development	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7J6W6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J6W6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JYR8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYR8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g41420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g41420

Paralog	Evidence	Comments
Glyma06g13430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g41420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g235800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g41420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g41420

Limit To All Plant Sequences

>Glyma04g41420.2   sequence type=transcript   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGATTAATAATGCTATTATTATATTCAATTTACTTTAAAAATTTAATTACATGATATATTAAACTCCCTTTAAAAATAATTTAATATAATCTACAATCAATTTTTTTAAAAGAAAAAGTTAGGCAGGCCTTGGTGTTTGGTGTTTTTACTTTATCCCTGGATTAGATAAAGTAAAACTCCAATACCAAACACCCCATTTGGTGATGAGCATAAGTAATCTTCTGAATCTAAAGACAAAACCCTCTCTGAACCCTATCCCAACCCTATCCCTCTTCTCAGATTCATTCCATCATGGCTCTCTCCAAAGCCACCTTCTTGACGCACCTCAGAACCCTCTCCAATTCTCACCGCCGCCCTTCCTCGTGCGTTTCAATCCGCCTCCTCTCCTTCTCCTCCCCGGAGGAGGCCGCGGCGGAGCGCCGCCGAAGAAAGCGCCAGCTCCGCATGGAACCGCCCCTCTCCGCCCTGAACCGCACCCAAACCGCTCCAAAGCCCCTACAATCACCCTATTATCTAAACCCTAACAACCCCAAGCTCCCGGAACACGTGTCTGCGCTCACCGGCAACCGGCTGAACCTTCACAACCGAATTCTAACCCTAATCCGCGAGAACGACCTCGACGAGGCGGCGCTGTACACGCGCCACTCGATCTACTCCAACTGCCGCCCCACCATCTTCACCATTAACGCCGTCCTCGCCGCCCTCCTCCGCCAGTCCCGCTACTCCGACCTCCTCTCCCTCCACCGCTTCATCACGCAGGCCGGCGTGGTCCCCAACATCATCACCCACAACCTCGTATTCCAGACCTACCTCGATTGCCGCAAACCCGACACCGCCCTCGAACACTACAAGCAGTTCCTCAACGACGCCCCCATGAACCCTTCCCCCACCACCTACCGCGTCCTCATCAAAGGGTTAATCGATAACAGCAAACTCGAACGTGCAATGGATATTAAAACCGAAATGGATTCCAAAGGGTTTGCCCCTGATCCTCTTGTTTACCATTACTTGATGTTGGGGCATGCTAGGGTTTCCGATGGTGATGCTATTTTGAGGCTTTATGAGGAGCTGAGAGAGAGATTGGGTGGGGTTGTGCAAGATGGGATTGTGTTTGGGTGTTTGATGAAGGGGTATTTTGTTAAGGGGATGGAGAAGGAGGCTATGGAGTGTTACGAGGAGGCTCTGGGGAAGAAGAAGATGAGTGCTGTCGGGTATAATTCGGTGCTCGATGCGCTTTCTAAGAATGGGAGGTTTGACGAGGCGTTGAGGCTTTTTGATAGGATGATGAAGGAGCATGAACCTCTGAAGAGGTTGAGTGTGAATTTGGGGAGCTTTAATGTGATTGTGGATGGGTATTGTGATGAAGGGAGGTTTGAGGAGGCCATGGAGGTTTTTAGGAAGATGGGGGAGTATCGGTGTAGCCCCGATACGTTGTCGTTCAATAACTTGATTGATAGGTTGTGTGATAATGGGAGGATTGTGGAGGCTGAGGAGGTTTATGGGGAGATGGAGGGGAAAGGGGTGAGTCCTGATGAATTTACTTATGGGTTGTTGATGGATGCTTGTTTTAGAGAGAATAGGGCTGATGACGCAGCTGCGTATTTTAGGAAAATGGTGGACTCTGGGTTGAGGCCTAACTTGGCTGTTTACAATAGGTTGGTTGGTGGGTTGGTTAAGGTTGGGAAGATTGATGAGGCAAAGGGTTTCTTTGAGTTGATGGTGAAGAAGCTCAAGATGGATGTTACTAGCTATCAGTTCATAATGAAGGTGTTGAGTGATGAGGGGAGATTGGATGAGATGCTTAAGATTGTTGATACGTTGTTGGATGACAATGGGGTTGATTTTGATGAGGAGTTCCAGGAGTTTGTCAAGGGGGAGTTGAGGAAAGAAGGGAGAGAAGAGGAGTTGACCAAACTGATGGAGGAGAAAGAAAGGCTGAAAGCTGAAGCTAAGGCGAAGGAAATCGAGGCAGCTGAAGCTGCCAAAAGAAGTGCAAGAGCAGCAGTAGCTTCTTTGCTTCCATCCAAGTTGTTTGGGAACAAGGAAACGGATTTAGAATCTAAACGCGAGGGTGAAATTCAAGCTCTCAATGAAGAGAACACTAATGCCACTGCTTCCGAGGCGGAGTTGGTGGAGGAAACGACTGAAACTGAGGGTGATAGAGCAAGTGAACAGTTAACAGGTTGAAGTTGTTGCAACTTCTTGGTGCTTAGATGGGGAGGTATAATAACGTAATTGTGCATGGATGAGGAGTGCCTTTTTATATTGGTGTTCCTGTACTGGAGCAACAAGATCAGCCATTTATTTCTAAAAGGGATAGTGTTTTCTGGGGATTATGATGGATTTTCTTAATTTGCAAGTAAAGCAATGTTGACATTGGTGGTAGATGACAGGTTAGAAGAAAGATGAAGCAACTTATTGTATTTTGGACACCGAGATGAGTTGTGAACAACATTGTGGTGCGTAAAAAGCTTACTTCTTTTCACTGTTCTGCTATCAATGATCTCCTGATTCAACTACCTTTAAGATGCGTGCACTCGTACACACTCTTCCAAACTTTTAAATTTTGAACAAATCCAAATACCAAGATGTTGAATCAAATCTTACAATTCGTTGTGGGTTTGGATGGAATTAGATTATTTTAATACTCCATTACAGATATAATTGATTTAGGCATGTTATGGGAAATTTTTTTATAATAATCTATTTTGTTTCTATATCCGAAACAATAATTTTTATGGCAATTTTTTTTTAAGAGTAGGCTTAATTATCAGTTTAGTCCTCAAGTTATATTAAAAGATTAAAAGATTAAATATGATGTTGAAGTTTTTAAAAGATTCAATTTGATCTTTAAATATTTTTAAAATATATCAATTTAATCATTTTTGTCCAACTAAATTTTCG

Coding sequences of Glyma04g41420

Limit To All Plant Sequences

>Glyma04g41420.1   sequence type=CDS   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCTCCAAAGCCACCTTCTTGACGCACCTCAGAACCCTCTCCAATTCTCACCGCCGCCCTTCCTCGTGCGTTTCAATCCGCCTCCTCTCCTTCTCCTCCCCGGAGGAGGCCGCGGCGGAGCGCCGCCGAAGAAAGCGCCAGCTCCGCATGGAACCGCCCCTCTCCGCCCTGAACCGCACCCAAACCGCTCCAAAGCCCCTACAATCACCCTATTATCTAAACCCTAACAACCCCAAGCTCCCGGAACACGTGTCTGCGCTCACCGGCAACCGGCTGAACCTTCACAACCGAATTCTAACCCTAATCCGCGAGAACGACCTCGACGAGGCGGCGCTGTACACGCGCCACTCGATCTACTCCAACTGCCGCCCCACCATCTTCACCATTAACGCCGTCCTCGCCGCCCTCCTCCGCCAGTCCCGCTACTCCGACCTCCTCTCCCTCCACCGCTTCATCACGCAGGCCGGCGTGGTCCCCAACATCATCACCCACAACCTCGTATTCCAGACCTACCTCGATTGCCGCAAACCCGACACCGCCCTCGAACACTACAAGCAGTTCCTCAACGACGCCCCCATGAACCCTTCCCCCACCACCTACCGCGTCCTCATCAAAGGGTTAATCGATAACAGCAAACTCGAACGTGCAATGGATATTAAAACCGAAATGGATTCCAAAGGGTTTGCCCCTGATCCTCTTGTTTACCATTACTTGATGTTGGGGCATGCTAGGGTTTCCGATGGTGATGCTATTTTGAGGCTTTATGAGGAGCTGAGAGAGAGATTGGGTGGGGTTGTGCAAGATGGGATTGTGTTTGGGTGTTTGATGAAGGGGTATTTTGTTAAGGGGATGGAGAAGGAGGCTATGGAGTGTTACGAGGAGGCTCTGGGGAAGAAGAAGATGAGTGCTGTCGGGTATAATTCGGTGCTCGATGCGCTTTCTAAGAATGGGAGGTTTGACGAGGCGTTGAGGCTTTTTGATAGGATGATGAAGGAGCATGAACCTCTGAAGAGGTTGAGTGTGAATTTGGGGAGCTTTAATGTGATTGTGGATGGGTATTGTGATGAAGGGAGGTTTGAGGAGGCCATGGAGGTTTTTAGGAAGATGGGGGAGTATCGGTGTAGCCCCGATACGTTGTCGTTCAATAACTTGATTGATAGGTTGTGTGATAATGGGAGGATTGTGGAGGCTGAGGAGGTTTATGGGGAGATGGAGGGGAAAGGGGTGAGTCCTGATGAATTTACTTATGGGTTGTTGATGGATGCTTGTTTTAGAGAGAATAGGGCTGATGACGCAGCTGCGTATTTTAGGAAAATGGTGGACTCTGGGTTGAGGCCTAACTTGGCTGTTTACAATAGGTTGGTTGGTGGGTTGGTTAAGGTTGGGAAGATTGATGAGGCAAAGGGTTTCTTTGAGTTGATGGTGAAGAAGCTCAAGATGGATGTTACTAGCTATCAGTTCATAATGAAGGTGTTGAGTGATGAGGGGAGATTGGATGAGATGCTTAAGATTGTTGATACGTTGTTGGATGACAATGGGGTTGATTTTGATGAGGAGTTCCAGGAGTTTGTCAAGGGGGAGTTGAGGAAAGAAGGGAGAGAAGAGGAGTTGACCAAACTGATGGAGGAGAAAGAAAGGCTGAAAGCTGAAGCTAAGGCGAAGGAAATCGAGGCAGCTGAAGCTGCCAAAAGAAGTGCAAGAGCAGCAGTAGCTTCTTTGCTTCCATCCAAGTTGTTTGGGAACAAGGAAACGGATTTAGAATCTAAACGCGAGGGTGAAATTCAAGCTCTCAATGAAGAGAACACTAATGCCACTGCTTCCGAGGCGGAGTTGGTGGAGGAAACGACTGAAACTGAGGGTGATAGAGCAAGTGAACAGTTAACAGGTTGA

>Glyma04g41420.2   sequence type=CDS   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCTCCAAAGCCACCTTCTTGACGCACCTCAGAACCCTCTCCAATTCTCACCGCCGCCCTTCCTCGTGCGTTTCAATCCGCCTCCTCTCCTTCTCCTCCCCGGAGGAGGCCGCGGCGGAGCGCCGCCGAAGAAAGCGCCAGCTCCGCATGGAACCGCCCCTCTCCGCCCTGAACCGCACCCAAACCGCTCCAAAGCCCCTACAATCACCCTATTATCTAAACCCTAACAACCCCAAGCTCCCGGAACACGTGTCTGCGCTCACCGGCAACCGGCTGAACCTTCACAACCGAATTCTAACCCTAATCCGCGAGAACGACCTCGACGAGGCGGCGCTGTACACGCGCCACTCGATCTACTCCAACTGCCGCCCCACCATCTTCACCATTAACGCCGTCCTCGCCGCCCTCCTCCGCCAGTCCCGCTACTCCGACCTCCTCTCCCTCCACCGCTTCATCACGCAGGCCGGCGTGGTCCCCAACATCATCACCCACAACCTCGTATTCCAGACCTACCTCGATTGCCGCAAACCCGACACCGCCCTCGAACACTACAAGCAGTTCCTCAACGACGCCCCCATGAACCCTTCCCCCACCACCTACCGCGTCCTCATCAAAGGGTTAATCGATAACAGCAAACTCGAACGTGCAATGGATATTAAAACCGAAATGGATTCCAAAGGGTTTGCCCCTGATCCTCTTGTTTACCATTACTTGATGTTGGGGCATGCTAGGGTTTCCGATGGTGATGCTATTTTGAGGCTTTATGAGGAGCTGAGAGAGAGATTGGGTGGGGTTGTGCAAGATGGGATTGTGTTTGGGTGTTTGATGAAGGGGTATTTTGTTAAGGGGATGGAGAAGGAGGCTATGGAGTGTTACGAGGAGGCTCTGGGGAAGAAGAAGATGAGTGCTGTCGGGTATAATTCGGTGCTCGATGCGCTTTCTAAGAATGGGAGGTTTGACGAGGCGTTGAGGCTTTTTGATAGGATGATGAAGGAGCATGAACCTCTGAAGAGGTTGAGTGTGAATTTGGGGAGCTTTAATGTGATTGTGGATGGGTATTGTGATGAAGGGAGGTTTGAGGAGGCCATGGAGGTTTTTAGGAAGATGGGGGAGTATCGGTGTAGCCCCGATACGTTGTCGTTCAATAACTTGATTGATAGGTTGTGTGATAATGGGAGGATTGTGGAGGCTGAGGAGGTTTATGGGGAGATGGAGGGGAAAGGGGTGAGTCCTGATGAATTTACTTATGGGTTGTTGATGGATGCTTGTTTTAGAGAGAATAGGGCTGATGACGCAGCTGCGTATTTTAGGAAAATGGTGGACTCTGGGTTGAGGCCTAACTTGGCTGTTTACAATAGGTTGGTTGGTGGGTTGGTTAAGGTTGGGAAGATTGATGAGGCAAAGGGTTTCTTTGAGTTGATGGTGAAGAAGCTCAAGATGGATGTTACTAGCTATCAGTTCATAATGAAGGTGTTGAGTGATGAGGGGAGATTGGATGAGATGCTTAAGATTGTTGATACGTTGTTGGATGACAATGGGGTTGATTTTGATGAGGAGTTCCAGGAGTTTGTCAAGGGGGAGTTGAGGAAAGAAGGGAGAGAAGAGGAGTTGACCAAACTGATGGAGGAGAAAGAAAGGCTGAAAGCTGAAGCTAAGGCGAAGGAAATCGAGGCAGCTGAAGCTGCCAAAAGAAGTGCAAGAGCAGCAGTAGCTTCTTTGCTTCCATCCAAGTTGTTTGGGAACAAGGAAACGGATTTAGAATCTAAACGCGAGGGTGAAATTCAAGCTCTCAATGAAGAGAACACTAATGCCACTGCTTCCGAGGCGGAGTTGGTGGAGGAAACGACTGAAACTGAGGGTGATAGAGCAAGTGAACAGTTAACAGGTTGA

Predicted protein sequences of Glyma04g41420

Limit To All Plant Sequences

>Glyma04g41420.1   sequence type=predicted peptide   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSKATFLTHLRTLSNSHRRPSSCVSIRLLSFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPLQSPYYLNPNNPKLPEHVSALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSDLLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLIKGLIDNSKLERAMDIKTEMDSKGFAPDPLVYHYLMLGHARVSDGDAILRLYEELRERLGGVVQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKKKMSAVGYNSVLDALSKNGRFDEALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSFNNLIDRLCDNGRIVEAEEVYGEMEGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMVDSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDEMLKIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEELTKLMEEKERLKAEAKAKEIEAAEAAKRSARAAVASLLPSKLFGNKETDLESKREGEIQALNEENTNATASEAELVEETTETEGDRASEQLTG*

>Glyma04g41420.2   sequence type=predicted peptide   gene model=Glyma04g41420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSKATFLTHLRTLSNSHRRPSSCVSIRLLSFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPLQSPYYLNPNNPKLPEHVSALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSDLLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLIKGLIDNSKLERAMDIKTEMDSKGFAPDPLVYHYLMLGHARVSDGDAILRLYEELRERLGGVVQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKKKMSAVGYNSVLDALSKNGRFDEALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSFNNLIDRLCDNGRIVEAEEVYGEMEGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMVDSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDEMLKIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEELTKLMEEKERLKAEAKAKEIEAAEAAKRSARAAVASLLPSKLFGNKETDLESKREGEIQALNEENTNATASEAELVEETTETEGDRASEQLTG*

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