Glyma06g17790 - SoyBase

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Report for Sequence Feature Glyma06g17790

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14141755
stop:	14144181
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48560	AT	Annotation by Michelle Graham. TAIR10: chlorsulfuron/imidazolinone resistant 1 \| chr3:18001530-18003542 REVERSE LENGTH=670	SoyBase	E_val: 0	ISS
GO:0009082	GO-bp	Annotation by Michelle Graham. GO Biological Process: branched-chain amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003984	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetolactate synthase activity	SoyBase	N/A	ISS
GO:0004737	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate decarboxylase activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0030976	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate binding	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG4166	KOG	Thiamine pyrophosphate-requiring enzyme	JGI		ISS
PTHR18968	Panther	THIAMINE PYROPHOSPHATE ENZYMES	JGI		ISS
PTHR18968:SF13	Panther	INDOLEPYRUVATE DECARBOXYLASE	JGI		ISS
PF00205	PFAM	Thiamine pyrophosphate enzyme, central domain	JGI		ISS
PF02775	PFAM	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	JGI		ISS
PF02776	PFAM	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	JGI		ISS
UniRef100_I1KC25	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acetolactate synthase n=1 Tax=Glycine max RepID=I1KC25_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338624	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338624 related cluster n=1 Tax=unknown RepID=UPI0002338624	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma06g17790

Locus	Gene Symbol	Protein Name
ALS2	AHAS2	acetohydroxyacid synthase 2 gene
ALS2	ALS-2	Acetolactate synthase gene 2
ALS2	ALS2	Acetolactate synthase gene 2

Expression Patterns of Glyma06g17790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17790

Paralog	Evidence	Comments
Glyma04g37270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g169700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g17790

Limit To All Plant Sequences

>Glyma06g17790.1   sequence type=CDS   gene model=Glyma06g17790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCACAGCTTCCAGAACCACCCCATTCTCTTCTCCCTCTTCCTCTTCACACCCCACCTTCCCCAAACGCATTGCTAGATCCACCCTCCCTCTCTCTCATCAAACCTTCATTAAACCCAACCACGCGCTCAAAATCAAATGTTCCATCTCCAAACCCCCCTCGCCGCCGGCCACCACCACCACTGCAGCGCCGGCAACATCAGAGCCCTTCGTGTCGCGGTTCGCCTCCGCTGAACCGCGCAAGGGCTCGGACATCCTTGTGGAGGCCCTTGAGCGGCTGGGCGTGACTAATGTCTTCGCCTACCCCGGCGGCGCGTCGATGGAGATCCACCAGGCTCTCACGCGCTCCTCCACCATCCGCAACGTCCTCCCTCGCCACGAGCAGGGCGGCATCTTCGCCGCCGAGGGCTACGCGCGCTCCTCTGGCCTCCCCGGCGTCTGCATCGCCACCTCCGGCCCCGGCGCCACCAACCTCGTCAGCGGCCTCGCCGACGCCTTAATGGACAGCGTCCCCGTCGTCGCCATCACCGGCCAGGTCCCCCGGCGCATGATTGGCACCGACGCCTTCCAAGAAACCCCCATCGTCGAAGTCACCAGATCCATCACCAAGCACAACTACCTCATCCTCGACGTCGACGACATTCCCCGCATCGTCGCCGAAGCCTTCTTCGTCGCCACCTCCGGCCGCCCCGGCCCGGTCCTCATCGACATCCCCAAAGACGTCCAACAGCAACTCGCCGTGCCTAATTGGGACGAGCCCATCAACCTCCCCGGGTACCTCGCCAGGCTTCCCAGGCCCCCCACCGAGGCCCAATTAGAGCACATTGTCAGACTCATAACCGAGGCCCAAAAGCCCGTCCTCTACGTCGGAGGTGGCAGTTTGAATTCCAGTGATGAATTGAGACGCTTTGTGGAACTGACTGGTATTCCCGTTGCTAGCACTTTAATGGGCCTTGGAACTTATCCTATTGGGGATGAATATTCCCTTCAAATGTTGGGTATGCATGGTACTGTTTATGCTAACTATGCTGTTGACAATAGTGATTTGTTGCTTGCCTTTGGGGTAAGGTTTGATGACCGTGTTACTGGGAAGCTTGAGGCTTTTGCTAGTAGGGCTAAGATTGTTCACATTGATATTGATTCTGCTGAGATTGGAAAGAATAAGCAGGCGCATGTGTCGGTTTGCGCGGATTTGAAGCTGGCCTTGCAGGGGATTAATATGATTTTGGAGAAAAAAAGAGTGGGGGGTGGTAAGCTTGATCTTGGAGGCTGGAGGGAAGAGATTAATGTGCAGAAACACAAGTTTCCATTGGGTTACAAAACATTCCAGGACGCCATTTCCCCGCAGCATGCTATTGAGGTTCTTGATGAGTTGACAAATGGGGATGCTATTGTTAGTACTGGGGTTGGGCAGCATCAAATGTGGGCTGCACAGTTTTACAAGTACAAGAGACCGAGGCAGTGGTTGACCTCGGGGGGTCTTGGAGCCATGGGTTTTGGATTGCCTGCGGCTATTGGCGCTGCTGTTGCTAACCCCGGCGCTGTTGTGGTTGACATTGATGGAGATGGTAGTTTCATCATGAATGTTCAAGAATTGGCAACTATAAGAGTGGAGAATCTTCCTGTTAAGATATTGTTGTTGAATAATCAGCATTTGGGCATGGTGGTTCAGTGGGAGGATCGGTTCTACAAGTCCAATAGAGCTCACACCTATCTTGGAGACCCGTCTAGCGAGAATGAGATATTCCCAAACATGCTCAAGTTTGCTGACGCTTGTGGGATACCGGCAGCGCGTGTGACGAAGAAGGAAGAGCTTAGAGCAGAAATTCAGAAAATGTTGGACACCCCTGGCCCCTACCTTCTTGATGTCATTGTGCCACATCAGGAGCATGTGTTGCCGATGATTCCCAGTAATGGATCCTTCAAGGATGTGATAACGGAGGGAGACGGTAGAACGAGGTACTGA

Predicted protein sequences of Glyma06g17790

Limit To All Plant Sequences

>Glyma06g17790.1   sequence type=predicted peptide   gene model=Glyma06g17790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATASRTTPFSSPSSSSHPTFPKRIARSTLPLSHQTFIKPNHALKIKCSISKPPSPPATTTTAAPATSEPFVSRFASAEPRKGSDILVEALERLGVTNVFAYPGGASMEIHQALTRSSTIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALMDSVPVVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLILDVDDIPRIVAEAFFVATSGRPGPVLIDIPKDVQQQLAVPNWDEPINLPGYLARLPRPPTEAQLEHIVRLITEAQKPVLYVGGGSLNSSDELRRFVELTGIPVASTLMGLGTYPIGDEYSLQMLGMHGTVYANYAVDNSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQAHVSVCADLKLALQGINMILEKKRVGGGKLDLGGWREEINVQKHKFPLGYKTFQDAISPQHAIEVLDELTNGDAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPGAVVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSSENEIFPNMLKFADACGIPAARVTKKEELRAEIQKMLDTPGPYLLDVIVPHQEHVLPMIPSNGSFKDVITEGDGRTRY*

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