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Report for Sequence Feature Glyma07g17765

Feature Type:gene_model
Chromosome:Gm07
Start:17563424
stop:17565601
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g17765
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G35710AT Annotation by Michelle Graham. TAIR10: Protein kinase family protein with leucine-rich repeat domain | chr1:13220940-13224386 FORWARD LENGTH=1120 SoyBaseE_val: 1.00E-45ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF474Panther SUBFAMILY NOT NAMED JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
UniRef100_C6ZRZ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat family protein / protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRZ7_SOYBN SoyBaseE_val: 2.00E-53ISS
UniRef100_UPI000233E558UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E558 related cluster n=1 Tax=unknown RepID=UPI000233E558 SoyBaseE_val: 3.00E-59ISS

Expression Patterns of Glyma07g17765
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g17765 not represented in the dataset
Glyma07g17765 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g17765 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma07g17765
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g17765
>Glyma07g17765.1   sequence type=CDS   gene model=Glyma07g17765   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTGCAATTGGCTTGGAATTTCTTGTAACATAAATCTTACACATTTTGGAAGATTAAAGGGTACACTTCAAACTCTCAATTTTTCATCACTTCCAAATATCCTCATTCTAAATATAAGTCACAACTTCTTGAATGGAAGTATTCCTCCCCAAATTGGGGTGTTGTACAAACTCACTCATCTTGATTTAAGTGACAATTATCTCTTTGGACCAATTCCATCTCAAATAACTCAGTTAGTCAACTTGACAGAATTAAGGCTTCAGTTAAATGACATTTCTGGTTCCATTCCTCAGAAAATTGGGAAGTTAATCAATTTGAAGTATTTATTGCTTTCAGAAAATAATCTTTTGGGTTCTATTCCTCAAGAAATTAGAATGATAACAAATATGTATCAACTTGATCTTTCTGGTAAATCTTTATCAGGTAACTTGGTCATTTTGGAGTCTATTCGCCTCTTTGGAAACAAACTCTCTGAACCACTTCCTTCCACTATTGGAAACTTGACAAAGCTCACCAAACTTTCTTTGTCATCAAATAAGCTCTCTCGACCAATTCCTTCCACTATTGGAAACTTGACAAAGCTCACCAAACTTTCTTTGTTCTCAAACAAGCTCTCTGGACCAATTCCTTTCACTATTGGAAACTTGACAAAGCTTACCAAACTTTCTTTGTCAACAAATAAGCTCTTTGGACAAATTCCTTCTTCTATTGATAATTTTCGCCCAATTCATGATAGTAATATTATTACCTTCAACCTCATAGTTGGAGCCCAACCAAGTTTTTCTTTTATCATTGTATTGTCTAAATTACGACCTCGAACACCCTCAAGGCCAGGAATGTGGTGA
Predicted protein sequences of Glyma07g17765
>Glyma07g17765.1   sequence type=predicted peptide   gene model=Glyma07g17765   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SCNWLGISCNINLTHFGRLKGTLQTLNFSSLPNILILNISHNFLNGSIPPQIGVLYKLTHLDLSDNYLFGPIPSQITQLVNLTELRLQLNDISGSIPQKIGKLINLKYLLLSENNLLGSIPQEIRMITNMYQLDLSGKSLSGNLVILESIRLFGNKLSEPLPSTIGNLTKLTKLSLSSNKLSRPIPSTIGNLTKLTKLSLFSNKLSGPIPFTIGNLTKLTKLSLSTNKLFGQIPSSIDNFRPIHDSNIITFNLIVGAQPSFSFIIVLSKLRPRTPSRPGMW*






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