Glyma08g02940 - SoyBase

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Report for Sequence Feature Glyma08g02940

Feature Type:	gene_model
Chromosome:	Gm08
Start:	2029878
stop:	2033833
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g02940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42020	AT	Annotation by Michelle Graham. TAIR10: Heat shock protein 70 (Hsp 70) family protein \| chr5:16807697-16810480 REVERSE LENGTH=668	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0010197	GO-bp	Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005788	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum lumen	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0100	KOG	Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily	JGI		ISS
PTHR19375	Panther	HEAT SHOCK PROTEIN 70KDA	JGI		ISS
PF00012	PFAM	Hsp70 protein	JGI		ISS
UniRef100_B9RYP6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein, putative n=1 Tax=Ricinus communis RepID=B9RYP6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KPN3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KPN3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g02940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g02940

Paralog	Evidence	Comments
Glyma05g36620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g02940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g025700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g02940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g02940

Limit To All Plant Sequences

>Glyma08g02940.1   sequence type=CDS   gene model=Glyma08g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTAGCCATCATTTCCTTCGGATGTCTATTTGCGATTTCCATTGCTAAGGAGGAAGCCACCAAGTTAGGGACGGTCATCGGCATTGATCTTGGAACAACCTATTCATGTGTCGGTGTTTACAAGAATGGCCATGTTGAAATCATAGCCAACGACCAAGGTAACCGTATCACCCCATCGTGGGTTGCTTTCACCGACAGTGAGAGACTCATTGGGGAGGCTGCCAAGAATCAGGCAGCTGTCAACCCAGAAAGGACCATCTTTGATGTCAAGAGACTTATCGGAAGAAAGTTCGAAGATAAGGAAGTTCAAAAAGACATGAAGCTTGTTCCTTATAAGATTGTCAACAAGGATGGAAAACCTTACATTCAGGTGAAAATTAAGGATGGTGAGACCAAGGTGTTCAGCCCTGAGGAAATCAGTGCCATGGTTCTGATCAAGATGAAGGAAACTGCGGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGTCTCAATGTTGCTAGAATTATCAACGAACCCACTGCCGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGCGAGAAGAACATTCTAGTCTTTGATCTTGGTGGTGGGACCTTTGATGTCAGTATCTTGACAATTGATAACGGTGTTTTTGAAGTTCTTGCTACAAATGGAGATACTCATCTTGGAGGTGAGGATTTTGATCAAAGAATAATGGAGTACTTCATTAAATTGATCAAGAAAAAGCATGGAAAGGATATTAGCAAGGACAACAGAGCACTTGGAAAGCTGAGGAGAGAGGCTGAGCGTGCAAAGAGGGCACTCAGCAGCCAGCACCAGGTCCGCGTGGAAATTGAATCACTTTTTGATGGTGTTGATTTTTCTGAGCCACTCACCCGAGCTAGGTTTGAGGAGTTGAACAATGACTTGTTCCGGAAGACCATGGGTCCAGTGAAGAAGGCTATGGAAGATGCTGGATTACAGAAGAGTCAGATTGATGAGATTGTTCTTGTTGGTGGAAGCACAAGGATTCCAAAGGTACAACAGCTTTTGAAGGACTACTTTGATGGAAAGGAGCCAAACAAGGGGGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCGACCAAGAAATCTCAAGTGTTCACCACCTACCAGGACCAGCAGACTACCGTCTCCATTCAGGTTTTCGAAGGTGAGAGGAGTCTCACAAAGGATTGTCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCACCAGCTCCAAGGGGCACCCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCTAAATGTGAAGGCAGAAGACAAGGGAACTGGTAAATCAGAAAAGATCACCATTACAAACGAAAAGGGACGTCTTAGCCAGGAAGAAATAGATAGAATGGTTCGTGAAGCAGAAGAGTTTGCCGAGGAAGACAAGAAGGTGAAGGAGAGGATCGATGCTCGCAACAGTCTTGAAACCTACGTATACAACATGAAGAATCAGGTCAGTGACAAGGACAAGCTCGCGGACAAGTTGGAGTCAGATGAAAAGGAGAAAATTGAGACTGCAGTGAAAGAAGCATTGGAATGGCTGGATGACAACCAGAGTGTGGAGAAAGAAGATTATGAAGAGAAGCTGAAGGAGGTTGAAGCCGTTTGCAACCCAATCATCAGTGCTGTGTATCAGAGATCAGGAGGAGCCCCAGGTGGTGCAGGTGGCGAAGGCGAAGACGAGGATGATTCTCACGATGAGCTCTAG

Predicted protein sequences of Glyma08g02940

Limit To All Plant Sequences

>Glyma08g02940.1   sequence type=predicted peptide   gene model=Glyma08g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSWARRSLIVLAIISFGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFEDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMVLIKMKETAEAFLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQVSDKDKLADKLESDEKEKIETAVKEALEWLDDNQSVEKEDYEEKLKEVEAVCNPIISAVYQRSGGAPGGAGGEGEDEDDSHDEL*

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