Glyma09g02310 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g02310

Feature Type:	gene_model
Chromosome:	Gm09
Start:	1525108
stop:	1532259
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g02310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04760	AT	Annotation by Michelle Graham. TAIR10: vesicle-associated membrane protein 726 \| chr1:1334760-1336070 FORWARD LENGTH=220	SoyBase	E_val: 9.00E-128	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0859	KOG	Synaptobrevin/VAMP-like protein	JGI		ISS
PTHR21136	Panther	SNARE PROTEINS	JGI		ISS
PTHR21136:SF46	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00957	PFAM	Synaptobrevin	JGI		ISS
UniRef100_B9SVX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vesicle-associated membrane protein, putative n=1 Tax=Ricinus communis RepID=B9SVX6_RICCO	SoyBase	E_val: 2.00E-138	ISS
UniRef100_I1L0A9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L0A9_SOYBN	SoyBase	E_val: 2.00E-163	ISS

Expression Patterns of Glyma09g02310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g02310

Paralog	Evidence	Comments
Glyma15g13220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g02310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g019800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g02310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g02310

Limit To All Plant Sequences

>Glyma09g02310.2   sequence type=transcript   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCATTCGATGTTTCAATTTGAAAGTTCAAAGCTCCCCTTTCACATTTCAATTCTCTCTCTTTTAAACCCTGCTCTCCATTTTGTCTCTTCCTTTCTCTCTCTACAAAGAGTGCGTGTGAGAGTGAGAGAGAGAGAGAGAGGGATTTGGAACTTTGGATATCTATAGCGAAAGCGTGACACCACCAAAAACCGAACTGTTCCCAGATCTCTCTCTCACTCTTCCAACAATCGAAATCCAAAACCCTACCGACACCACACTCAATCGAAATTCTTCATTCTCTTCTCATCGATGGGGCAGAAGTCTCTGATCTACGCGTTCGTGTCGCGGGGAACAGTGATTCTCGCGGAGTACACCGAATTCAGCGGAAACTTCAACTCCATCGCCTTCCAGTGCCTTCAGAAGCTCCCTGCCACCAACAACAAGTTCACCTACAATTGCGACGCACACACCTTCAATTACCTCGTCGACAATGGCTACAATGAATCAATTGGAAGACAGTTACCCATGGCTTTTCTAGAGCGTGTCAAAGATGAATTTGTGTCAAAATATGGTGGTGGAAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAGGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAGGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGTGACAAGATAGAACTTCTGGTGGACAAGACTGAGAACCTTCATAACCAGGCACAAGATTTCAGGACTTCTGGAACCAGAATCCGTCGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGGAATATTGATAGCACTTATCCTGATAATAGTCCTATCTGTGTGTCGTGGGTTCAACTGTGGAAAATAGCACCATTCTCCGAGGCCTTTTATCATGTTATTTCAACCTTGAGATTATCGGAGAAAAGATACTAATGAATGGCATGAGTTTGTATGTAATATAGATATAGATATAGTAAAGGTCGTATGTTGGTCACTTTGATCTACTTATAAATGCTTTTGAAAATATAATTTGGGTTGTCAAATTGAAATTTGATTTCCATTTTATTCATATTCATGAATCATGTAAATGTGTTTCTTGATCATATTCTTTAATGATTCCAGTTACAGCATTTTGGCATTGTCGACCTTTATTAGATTTATTGAACTTGTGGCCTTTCATTCCTGATTCCATCCTACATAAGGAGTGGAGAGGTTATTTCTTTC

Coding sequences of Glyma09g02310

Limit To All Plant Sequences

>Glyma09g02310.1   sequence type=CDS   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAGAAGTCTCTGATCTACGCGTTCGTGTCGCGGGGAACAGTGATTCTCGCGGAGTACACCGAATTCAGCGGAAACTTCAACTCCATCGCCTTCCAGTGCCTTCAGAAGCTCCCTGCCACCAACAACAAGTTCACCTACAATTGCGACGCACACACCTTCAATTACCTCGTCGACAATGGCTACACATATTGTGTTGTTGCAGATGAATCAATTGGAAGACAGTTACCCATGGCTTTTCTAGAGCGTGTCAAAGATGAATTTGTGTCAAAATATGGTGGTGGAAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAGGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAGGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGTGACAAGATAGAACTTCTGGTGGACAAGACTGAGAACCTTCATAACCAGGCACAAGATTTCAGGACTTCTGGAACCAGAATCCGTCGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGGAATATTGATAGCACTTATCCTGATAATAGTCCTATCTGTGTGTCGTGGGTTCAACTGTGGAAAATAG

>Glyma09g02310.2   sequence type=CDS   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAGAAGTCTCTGATCTACGCGTTCGTGTCGCGGGGAACAGTGATTCTCGCGGAGTACACCGAATTCAGCGGAAACTTCAACTCCATCGCCTTCCAGTGCCTTCAGAAGCTCCCTGCCACCAACAACAAGTTCACCTACAATTGCGACGCACACACCTTCAATTACCTCGTCGACAATGGCTACAATGAATCAATTGGAAGACAGTTACCCATGGCTTTTCTAGAGCGTGTCAAAGATGAATTTGTGTCAAAATATGGTGGTGGAAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAGGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAGGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGTGACAAGATAGAACTTCTGGTGGACAAGACTGAGAACCTTCATAACCAGGCACAAGATTTCAGGACTTCTGGAACCAGAATCCGTCGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGGAATATTGATAGCACTTATCCTGATAATAGTCCTATCTGTGTGTCGTGGGTTCAACTGTGGAAAATAG

Predicted protein sequences of Glyma09g02310

Limit To All Plant Sequences

>Glyma09g02310.1   sequence type=predicted peptide   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVDNGYTYCVVADESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKLREHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGDKIELLVDKTENLHNQAQDFRTSGTRIRRKMWLQNMKIKLIVLGILIALILIIVLSVCRGFNCGK*

>Glyma09g02310.2   sequence type=predicted peptide   gene model=Glyma09g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVDNGYNESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKLREHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGDKIELLVDKTENLHNQAQDFRTSGTRIRRKMWLQNMKIKLIVLGILIALILIIVLSVCRGFNCGK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain