Glyma09g07980 - SoyBase

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Report for Sequence Feature Glyma09g07980

Feature Type:	gene_model
Chromosome:	Gm09
Start:	6983469
stop:	6999967
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g07980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G06210	AT	Annotation by Michelle Graham. TAIR10: binding \| chr2:2429108-2436588 REVERSE LENGTH=1091	SoyBase	E_val: 0	ISS
GO:0000003	GO-bp	Annotation by Michelle Graham. GO Biological Process: reproduction	SoyBase	N/A	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006325	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin organization	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009910	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010638	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016572	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone phosphorylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0030422	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0051276	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome organization	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG2002	KOG	TPR-containing nuclear phosphoprotein that regulates K(+) uptake	JGI		ISS
PTHR14027	Panther	TPR REPEAT NUCLEAR PHOSPHOPROTEIN/CTR9	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_B9MSY1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PAF1 complex component (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MSY1_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337B9A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337B9A related cluster n=1 Tax=unknown RepID=UPI0002337B9A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g07980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g07980

Paralog	Evidence	Comments
Glyma15g19450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g07980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g068600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g07980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g07980

Limit To All Plant Sequences

>Glyma09g07980.1   sequence type=CDS   gene model=Glyma09g07980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCCGTGTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGACCAGCTTCCGAGGGACGCCTCCGACATCCTCGACATCCTCAAGGCGGAACAAGCCCCTCTCGATCTCTGGCTCGTCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGGTCCAGTCCAGAAATTGATGACTATTATGCTGATGTCAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGAGCTTACTACAGCTACCTTGGAAAAATAGAGACGAAACAAAGAGAAAAGGAGGAGCATTTCATTTTGGCAACACAGTATTACAATAAAGCATCTAGGATTGACATGCACGAGCCCTCCACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGACCGTGATAATGTTCCTGCTCTTTTGGGCCAGGCATGTGTTGAGTTCAACCGCGGACGATATTCTGATTCACTTGAGTTGTATAAGAGAGCGTTGCTAGTGTATCCTGATTGCCCAGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAGAAAGCTCAACAGGCATTTGAACGTGTTTTACAGCTAGATCCAGAAAATGTTGAGGCTCTTGTTGCCCTTGCTATAATGGATTTGCGTACTAATGAAGCTACTGGAATCAGGACGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGACAGCATTTTTTAGTAGAACAACTGACTGAAACTGCATTGGCTGTTACCAACCATGGCCCAACAAAGTCTCACTCTTACTACAATTTAGCACGTTCATATCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCCGTCAAGGAAGTCAACAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTGCAGATAAAGTTGGGAGATTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCTTGGAAGTGTACCCAGATAATTGTGAGACATTGAAAGCGCTTGGGCATATATATGTTCAACTTGGTCAAACTGACAAGGGCCAGGACTTTATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCCCAGGCGTTTCTTGAGCTGGGAGAATTGTTAATTCTTTCTGACACGGGAGCTGCACTGGATGCATTCAAAACTGCTCGTACTCTATTTAAGAAGGGAGGTCAAGAAGTACCAATTGAATTACTCAATAATATTGGTGTGCTTCAGTTTGAAAGGGGGGAATTTGAGCTTGCTCAACAAACATTTAAGGAGGCACTAGGTGATGGTGTTTGGCTATCTTTCATCAACGAGGAAAAGAAGTCTTCCATTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGAAATTATTTCATGACCTTGAAAGCAATGGTCACCATGTGGAAGTTCCTTGGGATAAAGTCACTGTACTCTTTAACTTGGCTAGGTTACTTGAGCAGTTAAATGATTCTGGAACTGCAAGCATATTGTATCGCCTTGTCTTGTTCAAGTATCCTGACTATATTGATGCGTATCTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTCTGTTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATAACAAGTGTCCCAATGCATTATCTATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTGAAGGCAAAAGAAACTCTCCGCGCGGCTAGTGATGCAACTGAAGGCAAGGACTCATATGCCTCTCTTTCTCTGGGAAACTGGAACTACTTTGCAGCAGTTCGCAATGAGAAGAGAAATCCGAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAAGAACTTTATACCAGAGTTCTGATTCAGCATTCTTCTAATTTATATGCTGCCAATGGTGCTGCGGTAGTCTTAGCTGAAAAGGGCCATTTTGATGTGTCAAAGGATATCTTTACCCAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCGCATGTTTATTTTGCTCAGGGGAATTTTACTTTGGCTGTGAAAATGTATCAAAATTGCTTGCGGAAGTTTTATCACAACACAGACTCTCAAATACTTCTATATTTAGCTCGTACACATTACGAGGCTGAACAGTGGCAAGACTGTATAAAAACTCTACTGAGAGCCATACATTTGGCGCCCTCAAACTATACCTTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACACTACAAAAGGCAAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCAGAGCTTCAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAACCTACATATTCACGGGTTTGATGAGAAGAAAATTGACACTCATGTTGGATACTGCAACCACTTACTTTCAGCTGCAAAAGTTCATCTTGAAGCAGCTGAACGTGAAGAGCAGCAAGTACGGCAGAGACAAGAACTTGCTCGTCAGGTTGCATTTGCTGAGGAAGCCCGTCGAAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAACAAGAGGATGAACTAAAGCGAGTGCAACAACAGGAGGAACATTTTAGGCGTGTTAAGGAGCAATGGAAGAGCAGCAGTCATTCAAAACGGAGAGAAAGATCAGATGATGAAGAGGGAGGAGGGACTGGTGAGAAGAAGAGAAAAAAAGGTGGAAAGCGGAGAAAGAAGGATAAGCACTCAAAATCGCGCTATGACACAGAGGAACCCGAAAATGATATGATGGATGAACAGGAAATGGAGGATGAAGAAGCTGACATAAACTACAGAGAGGAGCCCCAAACTCAGATGAATGATGATGCTGAGGAAAATGCTCAGGGTCTTCTTGCAGCAGCTGGGCTTGAAGATTCCGATGCAGATGAGGAAGCGCCTGCACCTTCCTCAAGCATAGCCCGGCGAAGGCAAGCATTATCAGAATCTGATGATGACGAACCATTAATACAAAGGCAGTCAAGTCCAGCAAGAGAAAACTCTGCTGATATGCAGTTGAGTGATGGAGAAATCAGGGATGGGGATAAGACAAATGGAGATGATGGCAGTGAAGAGGAGAAACAATATTAG

Predicted protein sequences of Glyma09g07980

Limit To All Plant Sequences

>Glyma09g07980.1   sequence type=predicted peptide   gene model=Glyma09g07980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVEALVALAIMDLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVWLSFINEEKKSSIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNDSGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGELELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKEQWKSSSHSKRRERSDDEEGGGTGEKKRKKGGKRRKKDKHSKSRYDTEEPENDMMDEQEMEDEEADINYREEPQTQMNDDAEENAQGLLAAAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSADMQLSDGEIRDGDKTNGDDGSEEEKQY*

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