Glyma10g35560 - SoyBase

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Report for Sequence Feature Glyma10g35560

Feature Type:	gene_model
Chromosome:	Gm10
Start:	43811807
stop:	43822301
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g35560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48850	AT	Annotation by Michelle Graham. TAIR10: chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative \| chr1:18065154-18067956 REVERSE LENGTH=436	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004107	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chorismate synthase activity	SoyBase	N/A	ISS
KOG4492	KOG	Chorismate synthase	JGI		ISS
PTHR21085	Panther	CHORISMATE SYNTHASE	JGI		ISS
PF01264	PFAM	Chorismate synthase	JGI		ISS
UniRef100_I1LD16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Chorismate synthase n=1 Tax=Glycine max RepID=I1LD16_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LD16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chorismate synthase n=1 Tax=Glycine max RepID=I1LD16_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g35560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g35560

Paralog	Evidence	Comments
Glyma20g31980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g35560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g211400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g35560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g35560

Limit To All Plant Sequences

>Glyma10g35560.1   sequence type=CDS   gene model=Glyma10g35560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCTCTCTCCACCAAACCATTCTCATCAACCGACGCTCTCTCCGCCTTCGCTTCTCTCAATCCCGATCTCCGATCCTTCTCCCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTCAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATATGGAGAATCGCATGGAGGAGGTGTTGGTTGTATTATTGATGGATGTCCTCCTCACCTTCCTCTCTCCGAAGCTGATATGCAATTGGATCTTGACAGAAGGAGGCCAGGTCAGAGCCGAATTACAACTCCTAGAAAGGAGACTGATACATGTAAAATATTTTCAGGAGTTTCTGAAGGACTTACTACTGGAACTCCAATTCATGTATTTGTACCCAATACTGATCAAAGAGGACATGACTATACTGAGATGGCAGTAGCTTATAGGCCTTCCCATGCAGATGCTACCTATGACATGAAGTATGGTGTCAGATCCGTTCAGGGTGGTGGTAGATCTTCTGCAAGAGAAACAATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAGACTTTTCTGGAACTGAGATTCTTGCCTATGTCTCTCAAGTTTATAATATTGTTCTTCCAGAGGACCTTATTGATCATGACACTCTGACTCTTGATCAGATTGAGAGTAACATTGTTCGATGTCCAGACCCGGAATATGCAGAGAAGATGATATCTGCAATTGATGCTGTGCGAGTGAGAGGTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGGCACCTTTTTGACTGGGAGTGAACATAATGATGAGTTCTATATAGATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCCCGTGGTCGCCATGATCCTTGTGTTGTCCCAAGAGCTGTACCTATGGTAGAGGCAATGGTAGCTTTGGTTCTTGTGGACCAATTGATGGCACAATATGCGCAGTGTAATCTGTTTCCCGTAAACTCAGATTTGCAAGAACCCCTGGTGCCCATATTACGGCCAGAAGAAGCGCTTCTCTGA

Predicted protein sequences of Glyma10g35560

Limit To All Plant Sequences

>Glyma10g35560.1   sequence type=predicted peptide   gene model=Glyma10g35560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLSTKPFSSTDALSAFASLNPDLRSFSPGYLRLSLRPRLPKRLQIRAAGSIYGNHFRVSTYGESHGGGVGCIIDGCPPHLPLSEADMQLDLDRRRPGQSRITTPRKETDTCKIFSGVSEGLTTGTPIHVFVPNTDQRGHDYTEMAVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVASGAVAKKILKDFSGTEILAYVSQVYNIVLPEDLIDHDTLTLDQIESNIVRCPDPEYAEKMISAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAAMSLPATKGFQFGSGFAGTFLTGSEHNDEFYIDEHGNTRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGKKQNTVTRDKKETEFIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCNLFPVNSDLQEPLVPILRPEEALL*

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