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Report for Sequence Feature Glyma10g38255

Feature Type:gene_model
Chromosome:Gm10
Start:46057620
stop:46061839
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g38255
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07280AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat transmembrane protein kinase | chr5:2285088-2288666 FORWARD LENGTH=1192 SoyBaseE_val: 0ISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009556GO-bp Annotation by Michelle Graham. GO Biological Process: microsporogenesis SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010234GO-bp Annotation by Michelle Graham. GO Biological Process: tapetal cell fate specification SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0019199GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein kinase activity SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF121Panther EMS1 (EXCESS MICROSPOROCYTES1), KINASE JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_B9R9E2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor protein kinase exs, putative n=1 Tax=Ricinus communis RepID=B9R9E2_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233C92EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C92E related cluster n=1 Tax=unknown RepID=UPI000233C92E SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g38255
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g38255 not represented in the dataset
Glyma10g38255 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g38255
ParalogEvidenceComments
Glyma20g29600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g38255 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g237900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g38255
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g38255
>Glyma10g38255.1   sequence type=CDS   gene model=Glyma10g38255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTACCCTTAAACCTCGTACTCTCGTACCTCGTCCTGTTCCAGATTTTATTTTGTGCCATTGCAGCAGACCAAAGCAACGACAAGCTTTCCCTCCTTTCCTTCAAAGAGGGTCTCCAAAACCCTCACGTGCTCAACTCATGGCACCCTTCAACGCCGCACTGCGACTGGCTCGGCGTCACGTGCCAGCTCGGCCGAGTCACCTCGCTCTCTCTTCCCAGTCGCAGCCTCAGAGGAACGCTCTCTCCGTCGCTGTTTTCTCTCTCTTCGCTCTCTCTCCTCAACCTCCACGACAACCAGCTCTCCGGCGAGATCCCCGGCGAACTCGGCCGGTTGCCTCAGCTCGAAACTCTCCGACTCGGTTCCAACTCGCTCGCCGGAAAAATACCGCCGGAGGTGAGACTCTTGACGAGCCTCCGCACCCTCGACCTCTCCGGCAACGCCCTCGCCGGAGAAGTGCTGGAGAGTGTCGGGAACTTGACAAGGCTTGAGTTTCTCGACCTGAGTAACAATTTTTTCTCCGGTTCTCTTCCTGCGAGTCTGTTCACCGGAGCGAGGTCTTTGATTTCCGTTGATATCTCGAACAACTCGTTTTCCGGCGTAATCCCGCCGGAAATCGGAAACTGGCGGAACATCAGTGCCCTTTACGTGGGGATTAACAATTTGTCTGGGACTTTGCCGAGGGAAATTGGGTTGCTTTCAAAACTTGAAATTTTCTACTCCCCTTCCTGTTCCATCGAAGGTCCCTTGCCCGAGGAAATGGCCAACCTCAAATCCTTGACAAAACTCGACCTTTCTTACAACCCCCTGAGGTGTTCCATTCCCAACTTCATTGGGGAGTTGGAGAGTTTGAAGATTCTAGACCTTGTGTTCGCCCAGCTTAATGGGTCGGTTCCGGCTGAGGTGGGGAAATGTAAGAATTTAAGGTCTCTCATGCTCTCTTTCAATTCACTTTCTGGGTCACTGCCTGAGGAGCTTTCTGATCTTCCCATGTTAGCCTTTTCTGCCGAGAAGAACCAGCTTCATGGACCTTTGCCTTCTTGGCTTGGAAAGTGGAACAATGTTGATTCTCTTTTGCTCTCTGCTAACCGTTTTTCTGGGGTGATTCCACCTGAGCTTGGGAATTGTTCTGCGTTGGAGCATCTCAGTTTGAGCAGTAATTTGTTGACAGGTCCCATTCCTGAGGAGCTTTGTAATGCTGCCTCACTTTTGGAGGTTGATCTTGATGACAACTTTCTTTCTGGTACTATTGAGGAAGTGTTTGTTAAGTGTAAGAACCTTACTCAGTTGGTTTTGATGAACAATCGAATTGTTGGTTCTATACCTGAGTATCTTTCTGAGCTTCCCTTGATGGTGCTGGACCTTGATTCTAACAATTTTAGTGGGAAGATACCTTCTGGTCTGTGGAATTCATCAACCCTGATGGAATTCTCTGCTGCTAATAACCGTTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAGTGCTGTTATGCTGGAGAGGCTTGTTCTTAGCAATAATCGACTGACAGGTACTATACCTAAGGAAATTGGGAGTCTCACGAGTCTTTCAGTTCTTAATTTGAATGGGAATATGCTTGAAGGGAGTATTCCAACTGAGCTTGGTGATTGTACTTCCCTCACTACACTGGACCTTGGAAACAATCAGCTGAATGGGTCTATTCCTGAGAAACTGGTGGAACTGAGCCAATTGCAGTGCCTGGTATTTTCTCACAATAATCTGTCTGGGTCTATTCCTGCCAAGAAATCTTCCTATTTTCGACAACTTAGCATTCCTGATTTGAGCTTTGTTCAGCACCTTGGTGTGTTTGATCTTTCTCACAATAGATTGTCTGGCCCCATACCTGATGAACTTGGGAGCTGTGTGGTAGTTGTGGATCTCTTAGTCAGCAACAACATGCTTTCTGGTAGCATTCCTAGATCACTCTCGCTCTTGACGAATCTTACAACCTTGGATTTGTCTGGCAACTTGTTGTCAGGTTCCATTCCCCAAGAGTTTGGTGGTGTCCTCAAACTCCAGGGTCTGTATCTGGGACAGAATCAGCTATCAGGTACCATCCCTGAAAGCTTTGGAAAGTTGAGTAGTTTGGTGAAGTTGAATTTGACAGGAAATAAGTTGTCTGGTCCAATTCCAGTTAGTTTTCAGAACATGAAGGGGCTGACTCACTTGGACTTGAGCTCTAATGAGCTCAGTGGCGAGCTTCCATCCTCTCTTTCAGGAGTGCAAAGCCTTGTTGGGATTTATGTGCAGAATAACAGGCTTTCTGGCCAAATAGGGAATCTCTTCTCAAACTCCATGACATGGAGAATTGAGATAGTGAATTTAAGTAACAATTGCTTCAAAGGGAACTTGCCGCAATCTTTGGCAAATCTCTCTTACTTAACAAATTTGGATCTTCATGGAAATATGTTGACTGGAGAGATTCCTTTAGACCTTGGGGATCTAATGCAACTGGAATACTTTGATGTTTCAGGTAATCAACTATCTGGAAGGATTCCAGACAAGTTATGCAGCCTAGTTAATCTGAATCACCTAGATTTGTCTCAAAACAGGTTGGAAGGGCCGATACCAAGAAATGGAATTTGCCAGAACCTATCCAGAGTTAGACTTGCGGGGAACAAAAACCTGTGTGGCCAGATGTTGGGTATAGATTCTCAGGATAAAAGCATTGGCAGATCAATATTGTATAATGCATGGCGTCTTGCTGTAATTGCGGTTACAATCATATTGCTAAGTCTAAGCGTTGCTTTTCTTCTGCATAAATGGATTAGCAGGAGGCAAAATGATCCTGAGGAGCTTAAGGAGCGCAAACTAAACAGTTATGTTGATCACAATCTCTATTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTTGCAATGTTTGAACAGCCTCTCCTGAAGTTAACTTTGGTGGATATCCTTGAAGCAACTGATAATTTCAGCAAGGCAAATATAATTGGAGATGGAGGTTTTGGAACTGTCTACAAGGCCACTTTACCTAATGGAAAAACAGTTGCTGTGAAGAAGCTTAGTGAGGCTAAAACGCAGGGTCATCGCGAGTTCATGGCTGAAATGGAAACTTTGGGCAAGGTGAAGCATCATAATCTTGTTGCATTGCTCGGATATTGCTCAATCGGCGAGGAGAAGCTCCTTGTTTATGAATACATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAATAGGACTGGGGCCCTTGAAATCCTTGACTGGAACAAACGTTACAAAATCGCAACCGGTGCAGCTAGAGGATTAGCTTTCCTTCACCACGGTTTCATACCTCACATCATTCACAGGGATGTTAAAGCTAGCAACATCTTACTCAATGAAGATTTTGAGCCAAAGGTTGCAGACTTTGGACTGGCAAGACTTATCAGTGCCTGTGAGACTCATATCACCACTGATATTGCTGGAACATTTGGCTACATTCCACCAGAGTATGGGCAGAGTGGGAGATCCACAACAAGAGGAGATGTCTACAGTTTTGGTGTCATCTTGCTTGAACTAGTGACCGGAAAAGAGCCAACAGGACCAGATTTTAAAGAGATCGAAGGCGGGAACTTGGTTGGATGGGCTTGTCAGAAGATCAAGAAGGGGCAAGCTGTTGATGTTCTTGATCCAACAGTTCTTGATGCTGACTCGAAGCAGATGATGCTTCAAATGCTGCAAATTGCTTGTGTGTGCATATCTGACAATCCTGCAAACAGGCCTACCATGCTTCAAGTGCACAAATTCTTGAAGGGGATGAAGGGAGAGTAG
Predicted protein sequences of Glyma10g38255
>Glyma10g38255.1   sequence type=predicted peptide   gene model=Glyma10g38255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALPLNLVLSYLVLFQILFCAIAADQSNDKLSLLSFKEGLQNPHVLNSWHPSTPHCDWLGVTCQLGRVTSLSLPSRSLRGTLSPSLFSLSSLSLLNLHDNQLSGEIPGELGRLPQLETLRLGSNSLAGKIPPEVRLLTSLRTLDLSGNALAGEVLESVGNLTRLEFLDLSNNFFSGSLPASLFTGARSLISVDISNNSFSGVIPPEIGNWRNISALYVGINNLSGTLPREIGLLSKLEIFYSPSCSIEGPLPEEMANLKSLTKLDLSYNPLRCSIPNFIGELESLKILDLVFAQLNGSVPAEVGKCKNLRSLMLSFNSLSGSLPEELSDLPMLAFSAEKNQLHGPLPSWLGKWNNVDSLLLSANRFSGVIPPELGNCSALEHLSLSSNLLTGPIPEELCNAASLLEVDLDDNFLSGTIEEVFVKCKNLTQLVLMNNRIVGSIPEYLSELPLMVLDLDSNNFSGKIPSGLWNSSTLMEFSAANNRLEGSLPVEIGSAVMLERLVLSNNRLTGTIPKEIGSLTSLSVLNLNGNMLEGSIPTELGDCTSLTTLDLGNNQLNGSIPEKLVELSQLQCLVFSHNNLSGSIPAKKSSYFRQLSIPDLSFVQHLGVFDLSHNRLSGPIPDELGSCVVVVDLLVSNNMLSGSIPRSLSLLTNLTTLDLSGNLLSGSIPQEFGGVLKLQGLYLGQNQLSGTIPESFGKLSSLVKLNLTGNKLSGPIPVSFQNMKGLTHLDLSSNELSGELPSSLSGVQSLVGIYVQNNRLSGQIGNLFSNSMTWRIEIVNLSNNCFKGNLPQSLANLSYLTNLDLHGNMLTGEIPLDLGDLMQLEYFDVSGNQLSGRIPDKLCSLVNLNHLDLSQNRLEGPIPRNGICQNLSRVRLAGNKNLCGQMLGIDSQDKSIGRSILYNAWRLAVIAVTIILLSLSVAFLLHKWISRRQNDPEELKERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKANIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHHNLVALLGYCSIGEEKLLVYEYMVNGSLDLWLRNRTGALEILDWNKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWACQKIKKGQAVDVLDPTVLDADSKQMMLQMLQIACVCISDNPANRPTMLQVHKFLKGMKGE*






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