Glyma11g18141 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g18141

Feature Type:	gene_model
Chromosome:	Gm11
Start:	14665832
stop:	14670837
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g18141

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76810	AT	Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 2 (eIF-2) family protein \| chr1:28831366-28836310 REVERSE LENGTH=1294	SoyBase	E_val: 1.00E-99	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0008135	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding	SoyBase	N/A	ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF41	Panther		JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
UniRef100_I1LDH2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDH2_SOYBN	SoyBase	E_val: 4.00E-103	ISS
UniRef100_Q8H6S8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor n=1 Tax=Pisum sativum RepID=Q8H6S8_PEA	SoyBase	E_val: 1.00E-98	ISS

Expression Patterns of Glyma11g18141

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g18141 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U010100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g18141

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g18141

Limit To All Plant Sequences

>Glyma11g18141.1   sequence type=CDS   gene model=Glyma11g18141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACGGACACGGGAAGGAAGAAACCGAGGGAGAATGAGAACCTCGGCTCCCCGATGTTGTGTATCATGGGTCACGTAGATACCGGCAAAACCAAGCTCTTGGATTGTATTCGTGGAACAAATGTTCAGGAGAGGGAACTAATCAATGCAAAGCTGAATCCTCCTGGTCTACTTGTTCTTGATACCCCAGGGCACGAGTCATTTACTTACTTTAGGTTTATGGCTTCTCTTCTATGTGATTTTGCAATTTTGGTTGTTGACACTTTGCATGGGTTAGAGCAACAAACACTAGAATCCCTTTATCTATTAAGAGGCATGAATAAAAAATTCATTGTTGTCTTGAATAATGTTGACAAGCTTCGTGGGTGGAAACCATGTCACAATACTCCAATCACTGAAGCAGTGGAGCAGCAGACTCAGGATGTTCAACTTAAGTTTAATGGGTTGCTTGATGATATTACTTATCTGTTCGAACAAGTGGGACCGAGTACTCAGTATCTGAATACTGACATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATTCCTGAATTGTTATCACTATTGGTTCAATGGACCCAAAAAACAATGGCTCAGAAACTTACATGCAGTGAAAAATTGCAGTGTACTGTTTTAGATGTGGAGGTAGTAGAAGACCATGGAACTACTATTGATTTTGTTTTAGTTAATGGTGTTCTTCACGAAGTAGAACAAATAGTTGTCTGCGGAATGCCGGGGCCAATTGTCACCACAATCCAAGCTTTATTGGCACCTCATCCAATAAAGGAACTCTGTGTCAAGATTGGAACTCCAATCTGCATTCCTTCCAGAGAGTTCATTGATATTGGTCGCGTTGCCTCCATTGAGAATAACCATCTACCTGTTGATTATGCAAGGAAGGGGCAGAAAGTAGCCATTAAGGAAGCAAAAAGATTATACCTTTTGCACAATGTTGAAAAGGAAAAAAGATCATTAATAAAAATTAGCGTACCCCCGTGCCAGAAGGCACCTCATAGTCCTCGCTATGCGAAGATACCAGGGCGGGTCATTGTAGGCATGCACCTTTTGCTTTCATATGCAAAAAGGTGCATCTTTACTTGCTGTACCAAGGCTTGCTCTCAGAAAAGATCACTAATAACTATTTTAAATTATTTGAAGTAA

Predicted protein sequences of Glyma11g18141

Limit To All Plant Sequences

>Glyma11g18141.1   sequence type=predicted peptide   gene model=Glyma11g18141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTDTGRKKPRENENLGSPMLCIMGHVDTGKTKLLDCIRGTNVQERELINAKLNPPGLLVLDTPGHESFTYFRFMASLLCDFAILVVDTLHGLEQQTLESLYLLRGMNKKFIVVLNNVDKLRGWKPCHNTPITEAVEQQTQDVQLKFNGLLDDITYLFEQVGPSTQYLNTDIVPTSAISGEGIPELLSLLVQWTQKTMAQKLTCSEKLQCTVLDVEVVEDHGTTIDFVLVNGVLHEVEQIVVCGMPGPIVTTIQALLAPHPIKELCVKIGTPICIPSREFIDIGRVASIENNHLPVDYARKGQKVAIKEAKRLYLLHNVEKEKRSLIKISVPPCQKAPHSPRYAKIPGRVIVGMHLLLSYAKRCIFTCCTKACSQKRSLITILNYLK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain