Report for Sequence Feature Glyma12g36060
Feature Type: gene_model
Chromosome: Gm12
Start: 39176453
stop: 39180753
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g36060
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G78700 AT
Annotation by Michelle Graham. TAIR10: BES1/BZR1 homolog 4 | chr1:29599854-29601539 FORWARD LENGTH=325
SoyBase E_val: 8.00E-128 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF05687 PFAM
Plant protein of unknown function (DUF822)
JGI ISS
UniRef100_B9S8F2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BRASSINAZOLE-RESISTANT 2 protein, putative n=1 Tax=Ricinus communis RepID=B9S8F2_RICCO
SoyBase E_val: 7.00E-126 ISS
UniRef100_I1LV85 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LV85_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g36060
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g36060
Paralog Evidence Comments
Glyma13g34170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g36060 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g231500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g36060
Coding sequences of Glyma12g36060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g36060.1 sequence type=CDS gene model=Glyma12g36060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGTCGGGGACGAGGCTACCCACGTGGAAGGAGAGAGAGAACAACAAGAAGAGAGAGAGGAGAAGAAGAGCCATAGCGGCGAAGATCTTCGCGGGTCTGAGGATGTATGGGAACTTCAAACTCCCAAAACACTGCGACAACAATGAAGTCCTCAAAGCTCTCTGCAACAAAGCTGGTTGGACCGTTGAACCCGATGGAACCACTTACCGCAAGGGATGCAAGCCTTCAGAGGGCATGGAGATAGTTGGTGGATCATCAGCAGCAGCAAGCCCTTGCTCATCTTACCATCCAAGTCCATGTGCTTCCTACAATCCAAGCCCTGGCTCATCATCCCCTTACTACACCCAAATTCCCAATCCTGATGGCAACTCCCTCATTCCATGGCTCAAGAACCTCTCCACTGCTTCATCTTCAGCATCCTCTCCCAAGCTTCCCCACCTCTACCTCCACAGTGGCTCCATCAGTGCTCCTGTGACGCCTCCTCTGAGCTCTCCAACCGCCAGAACGCCACGAATCAATGCTGAGTGGGACGAGCAGTCTGCGCGGCCGGGGCCCGGATGGACCAGACAGCAGCACTACTCATTCCTGCCATCTTCTAGTCCTCCCAGCCCCGGCCGCCAGGTTGTTGACCCTGAATGGTTTGCTGGGATCAAGCTTCCTCATGTTAGTCCAACCTCACCAACATTCAGCTTGGTCTCCTCAAACCCTTTTGCCTTCAAGGAACATGCTTTGCCCTCCAGCGGTTCGCCAATGTGGACTCCGGCTCAGAGTGGAACATGCTCTCCTGCTGTTCCACCGGGTTCTTATCAGAATGCTGACATTCCTATGTCTGATGCCGTTTCGGATGAATTTGCATTTGGAAGCAACGTGTTGGGGCTTGTCAAGCCTTGGGAAGGAGAAAGGATCCATGAGGAATTTGGATCAGATGATCTTGAACTCACACTTGGTAACTCAAAGACCAGATGA
Predicted protein sequences of Glyma12g36060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g36060.1 sequence type=predicted peptide gene model=Glyma12g36060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTSGTRLPTWKERENNKKRERRRRAIAAKIFAGLRMYGNFKLPKHCDNNEVLKALCNKAGWTVEPDGTTYRKGCKPSEGMEIVGGSSAAASPCSSYHPSPCASYNPSPGSSSPYYTQIPNPDGNSLIPWLKNLSTASSSASSPKLPHLYLHSGSISAPVTPPLSSPTARTPRINAEWDEQSARPGPGWTRQQHYSFLPSSSPPSPGRQVVDPEWFAGIKLPHVSPTSPTFSLVSSNPFAFKEHALPSSGSPMWTPAQSGTCSPAVPPGSYQNADIPMSDAVSDEFAFGSNVLGLVKPWEGERIHEEFGSDDLELTLGNSKTR*
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