Glyma13g24380 - SoyBase

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Report for Sequence Feature Glyma13g24380

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27803199
stop:	27805093
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28400	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). \| chr1:9972732-9973739 REV	SoyBase	E_val: 2.00E-10	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1M070	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M070_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q01197	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein E6 n=2 Tax=Gossypium hirsutum RepID=E6_GOSHI	SoyBase	E_val: 1.00E-13	ISS

Expression Patterns of Glyma13g24380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g24380

Paralog	Evidence	Comments
Glyma07g32150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g24380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g175300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g24380

Limit To All Plant Sequences

>Glyma13g24380.1   sequence type=CDS   gene model=Glyma13g24380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAATCTCAAAACTCATTCCTTTCCTATTCTTAACAACCCTTTTAGTTTCCCTCCAAGTTAATGCCAGAGACAGCCAATTCTTCAGCAAAGTCACCCCTCTCAACAACAACATCAAAGAGACTGAGACTCCCAAAAATGAAGGCCAAGTAAACAAGCCAGAACAACAACCAACATTCATTCCTGAAACTGAAAACAGTTATGGCCTATATGGTCATGAGACTGGTCTGCACCCTCCCACCACTACAACAACTAATGCTGCACCCTACACCACCACTTACAAGCCATACAAAACTACCACAGCTGAAGAGGACACTGCCAAGTACTCCAACAACAACAACTTCTACAGCTTCAAGAAGGATGGCTACAACACCAACCAAAATGAGTTGAGTGAAACAACAAGACTCACAGGCACTTCTTACACCAACAACAACAACTACTTCTACAGCGGTAAGGATGCTTTTGCTAAGCAGAATGAATTGAGTGATACAAAGTACACTGAAGGTGGATACAACACGGAAAATCAGAACAGCAACAACAACTACTTCTACAACGGCAAGGATGCTTTTGGTAAGCAGAACGAATTGAGTGACACAAAGTACACTGAAGAAGGATACAACTCCATGGAGAATCAGAACAACAACAACAACTACTACAACGGCAAGGATGCTTTTGGTAAGCAAAATGAATTGAGTGACACAAAGTACACTGAAGAAGGATACAACTCCATGGAGAATCAGAACAACAACAACAACAACAATAAATATTACTACAACAACGACCAAGCCGCCAATGAGAAATACTTCTACAACAACAACAACAATGATGATGCTGCCAACAACAGGTATTACAAAACCAAATCTGTCAACAGCAATTACAACGGCGAGAGGCAGGGTTTGAGTGACACGAGGTTTATAGAGGGTGGAAAATACTTCTATGATGTTAAGTCTGAAAAGTACAACCATCCAACACAATATGGTGGCTCAACCAGAGGAGTTAACTCAGAAAATTGGTCCAGCAACAGAGGTTACTTTGGCAACAACAATGTGAACTCCATGGAAGGTTACCAGAACCAGGAGGAGTTTGAAGATGACCAAGAGGACTTCGACCCTTGA

Predicted protein sequences of Glyma13g24380

Limit To All Plant Sequences

>Glyma13g24380.1   sequence type=predicted peptide   gene model=Glyma13g24380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPISKLIPFLFLTTLLVSLQVNARDSQFFSKVTPLNNNIKETETPKNEGQVNKPEQQPTFIPETENSYGLYGHETGLHPPTTTTTNAAPYTTTYKPYKTTTAEEDTAKYSNNNNFYSFKKDGYNTNQNELSETTRLTGTSYTNNNNYFYSGKDAFAKQNELSDTKYTEGGYNTENQNSNNNYFYNGKDAFGKQNELSDTKYTEEGYNSMENQNNNNNYYNGKDAFGKQNELSDTKYTEEGYNSMENQNNNNNNNKYYYNNDQAANEKYFYNNNNNDDAANNRYYKTKSVNSNYNGERQGLSDTRFIEGGKYFYDVKSEKYNHPTQYGGSTRGVNSENWSSNRGYFGNNNVNSMEGYQNQEEFEDDQEDFDP*

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