Glyma14g27380 - SoyBase

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Report for Sequence Feature Glyma14g27380

Feature Type:	gene_model
Chromosome:	Gm14
Start:	33570749
stop:	33582544
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g27380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G43850	AT	Annotation by Michelle Graham. TAIR10: SEUSS transcriptional co-regulator \| chr1:16617872-16621596 FORWARD LENGTH=877	SoyBase	E_val: 0	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0048467	GO-bp	Annotation by Michelle Graham. GO Biological Process: gynoecium development	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription cofactor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
GO:0060090	GO-mf	Annotation by Michelle Graham. GO Molecular Function: binding, bridging	SoyBase	N/A	ISS
PTHR10378	Panther	LIM DOMAIN BINDING PROTEIN-RELATED	JGI		ISS
PTHR10378:SF6	Panther		JGI		ISS
UniRef100_B9S2M5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcriptional corepressor SEUSS, putative n=1 Tax=Ricinus communis RepID=B9S2M5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MAE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAE2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g27380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma14g27380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g119800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g27380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g27380

Limit To All Plant Sequences

>Glyma14g27380.1   sequence type=CDS   gene model=Glyma14g27380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCCTCCTGGGCCACCCACGCCGATTGGTGGTGCCCAGCCTGTGCCGCCGTCTCTTTTGAGGTCGAATTCGGGAATGTTGGGGGGCCAAGGGGGCCCTGTGCCTTCACAAACTTCGTTCCCTTCGCTGGTGGCGCAGCGAAACCAGTTTAACAACATGAATATGCTAGGGAATATGTCTAATGTGACTTCCTTGCTGAATCAGTCTTTCCCGAATGGAATTCCAAATTCAGGGCATGGTGGCCCTGGGAACAGCCAGCGCAGCGGAGGCATTGATGCTAGGGCGGAAGCGGATCCACTATCTGGTGTTGGCAGTGGAATGAATTTTGGCAATCAGTTGCAATCAAATTTGATGAACCCTGGTTCATCTGGTCAAGGTCAGGGTCAACAGTTTTCAAATGCTTCTGGTAGTCAGATGTTGCCAGATCAACAGCATTCGCAGCAACTTGAACCTCAGAATTTCCAACAACATAGTCAGCCATCAATGCAACAGTTCTCTGCTCCTTTGAATGCTCAGCAGCAGCAGCAGCAGCATTTTCAGTCCATTCGAGGAGGGATGGGTGGTGTTGGGCAGGTGAAGTTGGAGTCGCAGGTAAACAATGATCAGTTTGGGCACCAGCAGCAGTTGCCGTCAAGGAATCTTGCTCAGGTGAAGTTGGAACCGCAACAACTTCAAACATTGAGAAATATGGCACCGGTGAAACTGGAGCCCCAGCATAATGATCAGCAGTTTTTGCATCAGCAACAACAGCAGCAGCAGCAGCATCAACAACAACAACAGCAACAACTGCTCCACATGTCAAGGCAATCCTCTCAGGCTGCTGCTGCTCAGATGAATCATCTTTTGCAGCAGCAGAGACTTTTGCAATATCAACAACATCAGCAGCAACAGCAGCAACTCCTGAAGACAATGCCTCAACAACGGTCCCCGCTATCACAGCAGTTTCAACAGCAAAATATGCCTATGAGGTCTCCTGTGAAACCAGCATATGAACCCGGGATGTGTGCTAGGCGGCTGACACATTACATGTATCAGCAGCAACATAGACCTGAAGATAACAATATTGAATTCTGGAGGAAATTTGTTGCTGAGTATTTTGCTCCAAATGCCAAAAAGAAGTGGTGTGTTTCCATGTATGGAAGTGGCAGACAAACTACTGGAGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGTAATTGCAAACCTGGGCGTGGGTTTGAAGCAACTGCTGAGGTTCTTCCCAGGCTTTTCAAAATAAAATATGAAAGTGGTACTTTGGAAGAGCTACTTTATGTTGACATGCCTCGGGAATATCATAATTCCTCTGGCCAGATTGTTCTAGATTATGCAAAAGCAATACAAGAAAGCGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTCGAATAGTTTTCTCTCCAGACCTGAAGATATGCTCTTGGGAATTTTGTGCTCGACGCCATGAAGAGCTCATCCCCAGAAGATTGTTAATACCTCAGGTTAGTCAACTTGGAGTAGTTGCTCAAAAATACCAGGCATTTACTCAAAATGCAACACCCAATTTATCCGTTCCAGAGTTACAAAATAATTGCAATCTGTTTGTTGCATCAGCCCGTCAGTTGGCAAAAGCTTTAGAAGTTCCATTGGTCAATGATTTAGGATATACAAAGAGATACGTGCGGTGCCTTCAGATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTATAGCAGAGAAACCAGAACTGGTCCCATGGATAGCTTAGCTAAATTCCCTCGTAGAACAAGTGGTTCATCTGGACTTCATAGTCAGGCACAACAGTCTGAAGATCAATTACAGCAGCAGTCACAGCCACCCCAGCATATGGTGCCCCATACTTCTAATGGTGATCAAAACTCTGTGCAAACTGCTGCTATGCAAATTGCTTCTAGCAATGGTGTGACAAGTGTAAATAATTCCGTCAATGCAGCATCTGCATCTGCATCAAACACCACAAGCACCATTGTTGGACTTCTCCACCAGAATTCTATGAATTCTAGACAAAATTCAATGAACAATGCAAGCAGCCCTTATGGAGGTAGTTCTGTTCAAATTCCATCCCCAGGTTCCTCTGGTAATGTACCACAAGCGCAGCCAAATCAATCCCCTTTTCAATCACCGACACCATCCTCATCTAACAACCCACAAACATCTCACCCTGCCATAACTTCTGCAAACCACATGGGTACAGCAAACTCACCAGCTAATATTACCTTGCAACAACAGCAGACATCTCTTCCTGCTGAAGCTGACCCTAGCGATGCCCAGAGCTCAGTCCAGAAAATCATTCATGAGATGATGATTTCTTCCCAGATGAATGGCCCAGGTGGAATGGCTGGCACTGGTTTGCTTGGAAATGACATGAAGAATGTAAACGGGATTCTACCAGGGAGTAACAGTACAGGGCTCAACAGTGGCAGTGGCCTGGCGGGTAATGGGGCTGTGAACAGTAGTAATTCAGGTGTTGGGGTTGGTGGATATGGCACAATGGGTCTTGGTCCATCTGGTATGACCAATGGAATGAGACCTGTAATGGGACATAATTCAATCATGAATGGAAGGGGAGGAATGGCATCTCTTGCGCGAGATCAAGTTATGAATCATCAACAGGATCTGTCAAGCCAACTACTTAGTGGGCTAGGAGGAGTAAATGGCTTTAGTAATCTTCAATTTGATTGGAAACCGTCTCCATGA

Predicted protein sequences of Glyma14g27380

Limit To All Plant Sequences

>Glyma14g27380.1   sequence type=predicted peptide   gene model=Glyma14g27380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPPGPPTPIGGAQPVPPSLLRSNSGMLGGQGGPVPSQTSFPSLVAQRNQFNNMNMLGNMSNVTSLLNQSFPNGIPNSGHGGPGNSQRSGGIDARAEADPLSGVGSGMNFGNQLQSNLMNPGSSGQGQGQQFSNASGSQMLPDQQHSQQLEPQNFQQHSQPSMQQFSAPLNAQQQQQQHFQSIRGGMGGVGQVKLESQVNNDQFGHQQQLPSRNLAQVKLEPQQLQTLRNMAPVKLEPQHNDQQFLHQQQQQQQQHQQQQQQQLLHMSRQSSQAAAAQMNHLLQQQRLLQYQQHQQQQQQLLKTMPQQRSPLSQQFQQQNMPMRSPVKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNCKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGVVAQKYQAFTQNATPNLSVPELQNNCNLFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPMDSLAKFPRRTSGSSGLHSQAQQSEDQLQQQSQPPQHMVPHTSNGDQNSVQTAAMQIASSNGVTSVNNSVNAASASASNTTSTIVGLLHQNSMNSRQNSMNNASSPYGGSSVQIPSPGSSGNVPQAQPNQSPFQSPTPSSSNNPQTSHPAITSANHMGTANSPANITLQQQQTSLPAEADPSDAQSSVQKIIHEMMISSQMNGPGGMAGTGLLGNDMKNVNGILPGSNSTGLNSGSGLAGNGAVNSSNSGVGVGGYGTMGLGPSGMTNGMRPVMGHNSIMNGRGGMASLARDQVMNHQQDLSSQLLSGLGGVNGFSNLQFDWKPSP*

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