Glyma14g36221 - SoyBase

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Report for Sequence Feature Glyma14g36221

Feature Type:	gene_model
Chromosome:	Gm14
Start:	45457713
stop:	45480807
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g36221

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57230	AT	Annotation by Michelle Graham. TAIR10: AGAMOUS-like 16 \| chr3:21177710-21180671 FORWARD LENGTH=240	SoyBase	E_val: 6.00E-108	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0052543	GO-bp	Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription factor binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
KOG0014	KOG	MADS box transcription factor	JGI		ISS
PTHR11945	Panther	MADS BOX PROTEIN	JGI		ISS
PTHR11945:SF96	Panther	AGL21 (AGAMOUS-LIKE 21), TRANSCRIPTION FACTOR	JGI		ISS
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI		ISS
PF01486	PFAM	K-box region	JGI		ISS
UniRef100_B9SMY1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mads box protein, putative n=1 Tax=Ricinus communis RepID=B9SMY1_RICCO	SoyBase	E_val: 3.00E-134	ISS
UniRef100_UPI000233751F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233751F related cluster n=1 Tax=unknown RepID=UPI000233751F	SoyBase	E_val: 4.00E-152	ISS

Expression Patterns of Glyma14g36221

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g36221

Paralog	Evidence	Comments
Glyma02g38091	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g36221 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g183800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g36221

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma14g36221

Limit To All Plant Sequences

>Glyma14g36221.2   sequence type=transcript   gene model=Glyma14g36221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTCTTCTTAGTTTTCTTTTTCTTTTTCTTTTTAAGATTCTCTCTGTATTTCTCGGAAAATCAATTTGTTCTTCTTCTTCCTTGTTAACTACAGCATGTGGATCCACGCGTCTTCTACTTCGCTTTTGCAACAACCACTTCTTTTGATTTCGCTTTCTTTTTTCTTTTTCTTCATCAAATTGAAGTTTCGTTAAATCGTTTCTGGATCTGTTTTGCAGGAGTATTTTGTGGTTCGGAAGGATCTGATTGTTAGGGTTTGGTATGGGGAGAGGTAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGGAGGAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATCTTCTCCAGCACCGGAAAACTCTACGATTTTGCCAGCTCCGGCATGAAATCAGTAATTGACCGATACAACAAATCAAAAGAAGAACCTTGTCAACTTGGGAGTTCAGCTTCAGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGGAAAATGATGGGGGAAGAACTGTCAGGCTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCGAGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAGTTAAATCGGAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTATCAGAAGGTAAACCTAATCTGTCAAGAAAACATGGAATTGAAAAAGAAGGTCTATGGAACAAAAGATGATAACAAAACAAACAGAGATTCTGTTCTCACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAACACTACAAGGAACCTTCAGGAACTACAAAATTGGGATTGCAATTGCATTGATCCATTTACAGGACGTGTGTTTCTCAATTGCTATCAAGGAAAATGGACTCAAATTTTAACCTCAATGTTTTCATATAAATGTGGCATATAGACCACAAACAAATTAGCTTAAAGATTTTAATTTGAAATTATCAAAAAAAGAAAAGGCAACCCTAGCATGTATGTAAGAAACAATGAAAGCATCTTATGAGAAACCAAGACTCAAATCAAGGAAGAAATTCTTCAAACCGCACAGATGTGTGATTCATTTCACTTGTTTTATTGTGTTAAATTTTATTACTGGACTTCAAATGGGTGGAAGCTGCCACATTAAGCAAACATGATGTGATTAATACAGATAAAAAATCATTGCAATCAAGTGTATACAGATTCCAGCAGAACGAATATAATACTGCTGCAAAATGAATTTAAACGCCTATGCAAGAAAAAAAAAACATACATACAACAATTACAATGCATCCATGTATAAACTCAAGCCCTTAACCAAAATTTCACTTAAAGTTCAAAAATGAATGGTTAATATCACCCCACAATTTTGCTCTTCTTGACTTGATAGCATAACTTCCAAAGGAAAAGAAGAAAAAAAAATAGAACTGCATTAATGCATTGAAAAAGGTAGCTAATCAGCAGGTCAAGAGACATGAATAAATATCGTTCTTATTAAACTAAGAGGAAACAACAAGTAATCTATACTTAAAGTACTTAAATTTTATGAACGCGAGTGGGAGTAGAGAGTAGAGACCACTATATTTCACAAAAATCGATATATAAATAAAAATTGGAAACAGTGATGAGTCATAATAATAATATTACTTTAAGAATGGTGAAACACATGGCAAAAATCAATATCCAACTCACTTATATTGAAAATAAAAATCACTGCTTTAGCGCATTTTAAACTGAGTTTTAGTTACAATTATGGCTATTGAGAATCAGAACTAAAACCATCATTATAATCTACATCAAAGTGTAGCTAGCATTCCTCTAAAAGAAGATAGAATAATAAAGTCAATTACAAACACACGGTAAAACTACATGTGACTAAGGAAAAGAGTCCCGGATAAAATCATAAAATCTGTAATAAATATCAATCGAATTCCACAGCAGTTTGTTCCTTTAGATACTGCCGCTAAGTTAATTCCATCAACTTGATGAGAATTGGATTAGACATGTGTGGACTGCAAGAGATAGCTCATCCGATCAGCATCTTTTTTCTTCCAAGGACAATGCTAGAAGAAGCAACATTGACCAATTCACAAACTAGGAGGTTATTATGCTTTTACCGTATAACCCACGTACAACTAAAGGTCATTAATTGAAGCCAAAAGGTGGTGGTTTAGTCCACATCAACTAGAGATATTGCTTAAATAAAGTTTGGTTAGTCCTCACCTTACAAGTTACAAGCTGATTTTATGGGATTAAGTTAGGCCTTCAGCCCAAATTCTAATAATTGCCTTCAAATTCTTGAGCAGCCAACCAAATTAACATATATGCTCTAGATAATTCTCCTATGATCCTGAATGGTAGAGCCTCTCTTCCAACTAAATATTTTTAGTGTCCTACATTAAAGCTTGGGCAGTCCTCGCCTTTCAAGTTACAAGCTGATTTTACGGGATTGAGTTAGACCCTAAGTCCAAATTCTAATAATTGCCTTCAAATTCTTGAGCATTCATAGCCAATTTAACATATGCTCTACACCATTCTCCTATAACCCTGAATGATATAGCCTTTCTTTGAATTCATAATGTCCTACATTAAAGCTTGGGCAATAGTCCTCACCTTACAAGTTACAAGTTGGTTTAAGGGGATTAGTTAGGCCCTAAGACCAAATTCTAATACTCGCCTTCAAACTCTTGAGCAGTCATAGCCAAATATATACTCTAGACCATTCTCCTTGACCTTGAATGGTATAGTGTCTCTTTGAACTAAATTTTCACAATGTCCTACATCACCAGTATGTATTGTGTTGTGCTGAATGAAAAATTCAAAACACACCCTTACCATCAAACAAGATTCAAGTAAATTATACATGAGATTAACCAAAATGAACCATTCCAAGAGATGCGAAGTATGTGGGCATTGTCTCAAATGTGAGTTAAAAATTCTTCCAATGTTGCTTAAATCTATGTTGTTTTCAAACATAGGGATAAGCTTTGTAGATTCACTTATTTCAACTCAGATTCTAACTTATTTACCCACATAAAAGTTCAAATAATCTAAGATGAGGATATATCAAATTATTTAACGAGACTTAACAAGTAAAAAAAAAACACTTTAAAATTGAAATTGAAATTGGGAATAATGATAATGATATTACATGATGGCACACTATGAATAATTATGTTATATAAAATACGATTTGAAAAGCCAAGAGTTGACACACCGAGAATGTGGAAATAAAACGACTCATGTACATCTGCAAACCCATTATCCTACATCCCAAATGTTGCTAGGAAAAAAAACATAAAAATAAGAGAAATGCTAAGACCATTTTCTCTTACACTTTTTTTTAATATTTTCTATGTGATTGGCTTAATTTTGTTGGAAATCATCAATTTTAATAAGTCTCACTTCTAAATTAAAAAAGAATAATTAAATGAAAAGTGAGATAATTTCCAATAAATTTCAGACAATCATAAGCAGAGTATTGGAAACAAAGTGTTAGTCAAAATGTTGCTAGCCTTCCTCTGAAAGAAGATAGAATAATAAAGTCAATTACAAACACACGGTAAAACTACATGTGACTAAGGAAAAGAGTCCCGGATAAAATCATAAAATCTGTAATAAATATCAATCGAATTCCACAGCAGTTTGTTCCTTTAGATATTGCCGCTAAGTTAATTCCATCAACTTGATGAGCATTGGATTAGACATGTGTGGATTGCAAGAGATAGCTCATCCGATCAGCATCTTTTTTCTTCCAAGGACAATGCTAGAAGAAGCAACATTGACCAATTCACAAACTAGGAGGTTATTATGCTTTTACCGTATAACCCACGTACAGCTAAAGGTCATTAACTATAGATTATAACATCTCCGTTAAGACACAAAGGAATATTCCCCGACAGTGACACGATACTCATCTCAGTGAGTGGGTAGAAAGAAAGAAAAGCAACCAGGGAAAAAAAATAAAGGCATTCGACGGGGTAAAGTTTACGATCGATTAGGGGTAACGAAAAGTTGTATATAATAAGAAACGAT

Coding sequences of Glyma14g36221

Limit To All Plant Sequences

>Glyma14g36221.1   sequence type=CDS   gene model=Glyma14g36221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGGTAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGGAGGAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATCTTCTCCAGCACCGGAAAACTCTACGATTTTGCCAGCTCCGGCATGAAATCAGTAATTGACCGATACAACAAATCAAAAGAAGAACCTTGTCAACTTGGGAGTTCAGCTTCAGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGGAAAATGATGGGGGAAGAACTGTCAGGCTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCGAGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAGTTAAATCGGAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTATCAGAAGGTAAACCTAATCTGTCAAGAAAACATGGAATTGAAAAAGAAGGTCTATGGAACAAAAGATGATAACAAAACAAACAGAGATTCTGTTCTCACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAACACTACAAGGAACCTTCAGGAACTACAAAATTGGGATTGCAATTGCATTGA

>Glyma14g36221.2   sequence type=CDS   gene model=Glyma14g36221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGGTAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGGAGGAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATCTTCTCCAGCACCGGAAAACTCTACGATTTTGCCAGCTCCGGCATGAAATCAGTAATTGACCGATACAACAAATCAAAAGAAGAACCTTGTCAACTTGGGAGTTCAGCTTCAGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGGAAAATGATGGGGGAAGAACTGTCAGGCTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCGAGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAGTTAAATCGGAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTATCAGAAGGTAAACCTAATCTGTCAAGAAAACATGGAATTGAAAAAGAAGGTCTATGGAACAAAAGATGATAACAAAACAAACAGAGATTCTGTTCTCACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAACACTACAAGGAACCTTCAGGAACTACAAAATTGGGATTGCAATTGCATTGA

Predicted protein sequences of Glyma14g36221

Limit To All Plant Sequences

>Glyma14g36221.1   sequence type=predicted peptide   gene model=Glyma14g36221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSGMKSVIDRYNKSKEEPCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELQNLENQLEISLRGVRMKKDQLLMDEIQELNRKGNLIHQENVELYQKVNLICQENMELKKKVYGTKDDNKTNRDSVLTNGLGIGEDLQVPVNLQLSQPQQQHYKEPSGTTKLGLQLH*

>Glyma14g36221.2   sequence type=predicted peptide   gene model=Glyma14g36221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSGMKSVIDRYNKSKEEPCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELQNLENQLEISLRGVRMKKDQLLMDEIQELNRKGNLIHQENVELYQKVNLICQENMELKKKVYGTKDDNKTNRDSVLTNGLGIGEDLQVPVNLQLSQPQQQHYKEPSGTTKLGLQLH*

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