Report for Sequence Feature Glyma15g12370
Feature Type: gene_model
Chromosome: Gm15
Start: 9143102
stop: 9146079
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g12370
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G35760 AT
Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr2:15032059-15033094 FORWARD LENGTH=201
SoyBase E_val: 1.00E-87 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009741 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus
SoyBase N/A ISS
GO:0015996 GO-bp
Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR11615 Panther
NITRATE, FROMATE, IRON DEHYDROGENASE
JGI ISS
PTHR11615:SF57 Panther
INTEGRAL MEMBRANE FAMILY PROTEIN
JGI ISS
PF04535 PFAM
Domain of unknown function (DUF588)
JGI ISS
UniRef100_A7R385 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein GSVIVT00013502001 n=1 Tax=Vitis vinifera RepID=CSPLC_VITVI
SoyBase E_val: 5.00E-104 ISS
UniRef100_I1MFQ2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFQ2_SOYBN
SoyBase E_val: 7.00E-144 ISS
Expression Patterns of Glyma15g12370
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g12370
Paralog Evidence Comments
Glyma09g01470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g12370 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g116800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g12370
Coding sequences of Glyma15g12370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g12370.1 sequence type=CDS gene model=Glyma15g12370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTAGTTATTTGGGTGTAGGTGTTAGTCCTGGGAATGTCCCAGTTTACCACAGCACAAATGTGAAAGTGTTAGATAGGAAGATCAAGATAACAGAATTGGTGTTGAGGTGTGTGATCCTTGGTTTAGGGGTTCTTGCAGCTGTTCTTGTGGGGACTGATTCCGAAGTCAAGGAGTTTTTCTCATTTCAGAAGGAAGCTAAATTTACAGACATGAAGTCTTTGGTGTTCCTGGTGGTTGCAAATGGGTTAGCTGCTGGCTACTCCTTAATCCAAGGGTTGCGCTGTATCCTTAGTATGATCAGGGGAAGAGTACTCTTCAGCAAGCCCCTAGCTTGGGCCATTTTTTCTGGTGATCAGGTAATGGCCTATGTAACAGTGGTGGCATTGGCGGCGGCAGGGCAATCGGGTATGATTGCAAGGGTTGGCCAGCCAGAACTGCAATGGATGAAGATATGCAACATGTATGGGAAATTCTGCAACCAAGTGGGAGAAGGGATAGCTAGTGCTTTTGTGGCTAGCCTTAGCATGGTGGTCATGTCTTGTATTTCTGCTTTCAGCCTCTTCCGTTTGTATGGTGGTAACAAAACCAAAAATGTGCATTGGTAG
Predicted protein sequences of Glyma15g12370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g12370.1 sequence type=predicted peptide gene model=Glyma15g12370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSYLGVGVSPGNVPVYHSTNVKVLDRKIKITELVLRCVILGLGVLAAVLVGTDSEVKEFFSFQKEAKFTDMKSLVFLVVANGLAAGYSLIQGLRCILSMIRGRVLFSKPLAWAIFSGDQVMAYVTVVALAAAGQSGMIARVGQPELQWMKICNMYGKFCNQVGEGIASAFVASLSMVVMSCISAFSLFRLYGGNKTKNVHW*
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