Glyma15g41130 - SoyBase

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Report for Sequence Feature Glyma15g41130

Feature Type:	gene_model
Chromosome:	Gm15
Start:	48221759
stop:	48223179
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g41130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12830	AT	Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family \| chr3:4079117-4079515 REVERSE LENGTH=132	SoyBase	E_val: 5.00E-53	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02519	PFAM	Auxin responsive protein	JGI		ISS
UniRef100_B9HGV3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SAUR family protein n=1 Tax=Populus trichocarpa RepID=B9HGV3_POPTR	SoyBase	E_val: 8.00E-51	ISS
UniRef100_I1MJA2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJA2_SOYBN	SoyBase	E_val: 1.00E-94	ISS

Expression Patterns of Glyma15g41130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41130

Paralog	Evidence	Comments
Glyma08g17880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g258800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g41130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g41130

Limit To All Plant Sequences

>Glyma15g41130.1   sequence type=CDS   gene model=Glyma15g41130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAGCTGATCCGCCGGCTCTCGCGCGTGGCCGACTCCTCCAACTACACGCTCCTCCGCGCGGACTCCGCCGCCTCCCAGCGCTGCCACCACCGCCGCCGCCGTGCGGAGTCCTTTCGCCTCGCCGCTGCGGCGAAGATCCGCCGCTCCTCCGCGGTGGTGCCGGAGGGGCACGTGCCGATCTACGTCGGCGACGAGATGGAGCGCTTCGTCGTGTGCGCCGAGCTCCTCAACCACCCCGTCTTCGTGAAGCTCCTCAACGAATCGGCGCAGGAATACGGCTACGAACAGAAAGGAGTTCTCCGGCTGCCGTGCCGCGTCTTCGTCTTCGAGCGTGTTCTCGACGCGCTCCGTCTTGGACTCGACGCGCGTGACGTGGCGGAGCTCGTAAATTTCTCGCCGGAAGAGTTCTCCTGA

Predicted protein sequences of Glyma15g41130

Limit To All Plant Sequences

>Glyma15g41130.1   sequence type=predicted peptide   gene model=Glyma15g41130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQLIRRLSRVADSSNYTLLRADSAASQRCHHRRRRAESFRLAAAAKIRRSSAVVPEGHVPIYVGDEMERFVVCAELLNHPVFVKLLNESAQEYGYEQKGVLRLPCRVFVFERVLDALRLGLDARDVAELVNFSPEEFS*

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