Glyma17g36700 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g36700

Feature Type:	gene_model
Chromosome:	Gm17
Start:	40650529
stop:	40653859
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g36700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42610	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF607) \| chr5:17062507-17063934 FORWARD LENGTH=293	SoyBase	E_val: 2.00E-86	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2966	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13462	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13462:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04678	PFAM	Protein of unknown function, DUF607	JGI		ISS
UniRef100_Q8LNF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8LNF6_ORYSJ	SoyBase	E_val: 2.00E-76	ISS
UniRef100_UPI000233E7D0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E7D0 related cluster n=1 Tax=unknown RepID=UPI000233E7D0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g36700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g36700

Paralog	Evidence	Comments
Glyma14g08340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g36700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g248600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g36700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g36700

Limit To All Plant Sequences

>Glyma17g36700.1   sequence type=CDS   gene model=Glyma17g36700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTTCAGAAACTGTTATCGAAGCATTTCTTTGACGGTGTCAAAATGAGGCCGTTTGAACGCAGTGTCGTGTCGTCTCCAACTATGCAACAACAAGTCATCGCGCCTCCGAGCATGCTGGGAGTGAGTTCGGCAGACGGAGGATTTCTCCGGCGGTTTTTCCTCCTCCGGCAAGCGGTGTACCACTCCAGTCCGGCACGTTTCCCGGATTTCCTGTCTCTCCCCGTCGGAGAGAAGCTCCGGGAGAAACTCAAAAGCATCAACAACATAGCCGGCATAGGAGACTGTTGTGTTGCTCTCGCTCCGGCACCTATGGCCAGCGATGCGGTGTTTGGAAGTGGAATGTCTGTCAGCCACGCGAGGAAGATTTTGAGGGTGCCGCAAATGGAGAAGGTGAAGGCAAAGCTGAGAAACGTTTCGGAGAGTTCGGTTCCGTACTCGGAGTTTTTGCGGATCTGCGTTGAGACGTGTGAGAATCATGAGCAAGGGGCTGAGTTTGCAAAGATCTTGGATGAATCCGGAAACGTCATCGTTTTGGGGAAAGCAGTTTTTCTCCGGCCAGAGGAGGTGGCAAAATCAATAGAGAGCTTAATCTATCAATCAATAGCCAATCCAAATGACCCTAGAAGGAAGGAGCTAGAGCTGATGGAGAAGCAAAAGTGGATGATTGATGAAAAGGCCAAGGCCCAGGTCCGAGCTGAGCTTTATTTTGGGCTGGGCTTCTTGACAGTCCAGACCCTCGGGTTCATGAGGCTCACTTTCTGGGAACTAAGCTGGGATGTGATGGAGCCCATATGCTTCTTTGTTACCTCATTCGGCTTCGCTCTTGCTTATCTTTTCTTCCTCAAGACCTCCACAGAACCCACCTTTCAGGGCTTCTTCCATCACCGGTTTAAGGCCAAGCAAGAGCGTCTCATGAAGACACACAACTTTGACATGAGTAGGTACAACGAGTTATTTAAGGCATGCTATACAAATTATCATGGTGGTGCCAAATTTGAATCTTCTTATCCCTTCCACTACCCTGGGGAGACACATCTAACTGATCTAAGAGCCTTGCATCGTTGA

Predicted protein sequences of Glyma17g36700

Limit To All Plant Sequences

>Glyma17g36700.1   sequence type=predicted peptide   gene model=Glyma17g36700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLQKLLSKHFFDGVKMRPFERSVVSSPTMQQQVIAPPSMLGVSSADGGFLRRFFLLRQAVYHSSPARFPDFLSLPVGEKLREKLKSINNIAGIGDCCVALAPAPMASDAVFGSGMSVSHARKILRVPQMEKVKAKLRNVSESSVPYSEFLRICVETCENHEQGAEFAKILDESGNVIVLGKAVFLRPEEVAKSIESLIYQSIANPNDPRRKELELMEKQKWMIDEKAKAQVRAELYFGLGFLTVQTLGFMRLTFWELSWDVMEPICFFVTSFGFALAYLFFLKTSTEPTFQGFFHHRFKAKQERLMKTHNFDMSRYNELFKACYTNYHGGAKFESSYPFHYPGETHLTDLRALHR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain