Glyma18g41760 - SoyBase

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Report for Sequence Feature Glyma18g41760

Feature Type:	gene_model
Chromosome:	Gm18
Start:	50717394
stop:	50719944
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g41760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20970	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr1:7314338-7319246 FORWARD LENGTH=1364	SoyBase	E_val: 2.00E-45	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9SYP0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F9H16.4 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SYP0_ARATH	SoyBase	E_val: 3.00E-41	ISS
UniRef100_UPI000233D962	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D962 related cluster n=1 Tax=unknown RepID=UPI000233D962	SoyBase	E_val: 2.00E-177	ISS

Expression Patterns of Glyma18g41760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g41760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g192500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g41760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g41760

Limit To All Plant Sequences

>Glyma18g41760.1   sequence type=CDS   gene model=Glyma18g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTGAGAAAAGGCAAAGAAAAAAAATGTATTGACTGCATATACAATGATTTGAGGAGGCATCAGATGGAACATCAACCCTCTTATAAACCTGTAATTTTGGAGAGTGAAGCTAAACCTTCAAATGATGTAGTGGAGAGAGAAGCTGAACCTTCAAATGATGCAGTGGAGAGTGAAGCTGAACCTTCACAAGGTGCAGTAGATAGTGAAGCTGAACCTTCAAATGGTGCAGTGGAGAGTGAAGCTAAACCTTCACAAGGTGCAGTGGAGAGTGAAGTTGAGCCTTCACAAGATGTAGTGGAGAGTGAAGGTGAACTTTCAAATGGTGCAGTGAACCGTGAAGCTGAAATAACAAGTGGTGCAGTGGAGAGTGAAGCTAAAACTTCAAGTGGTGCAGTGAAGACTGAAACGAAAAATGATGTAGTGAATAGTGAAGCTGAAACTTCAAGTGGTGCCCTGCAGAGTGAAAAAGAGTCGTGTGTTGTTGAAGGTAGTAATCAAGGAGATGAAGATTCAAGACCTGCCTCAGATGCTTTGGATGGACATAATGTGGGTACAAAGGTAGTGAAAAACCCATTCTACTATTTGATCAGGGTTCCCAGATATGATGATGATGAAAACATAAAAAAGAACATAAAAAACGCTCTTCACCAAGTAGAGGAGAACCAGACTATAAAGGCCATTTGTAAGGATTTCGACCAAAAGTTTAGGGCTGCAATAGCAACCCATAGAGCTGCTCGTGACTTGCTCAAATCCAAATGCCAGGAAATAGATTCAGTCCAATCCATAATAAACATATTAAACAATGTAATTTTTGTTGGGGATATAGATGGCAAGATAAGAAGCATGGAACACATGATCGAGCATGAAACTTTGCCTCTAAATAAAGAAAAGCAATTGATACGCGAGATCAAACAATTGAAGCAGAACTGTGAGGAATTGTCTTCTAATATGAAAAAGCAGGATCAATCACAACAATCTGTAGACAACAAGGATGACAATATTGAAGAGCACTTTAAGCATTTACAGCTTTTGAAGAAGGAAATGGAAGTGCTTAGAAATAATGTCCTGAAGTCAGATACAAAAACTAAAGCCACAAAGAAGAAATATAATGATGAATGTGATACATTGAATAACCCAAAAAGTAAGAGTGGAAATAGCAAATATGGCAGAGCCCAAGGAGCTTCTAGCCACACCCAAAGCAAAAACTTTGTCAATTTTGACTCCCTTCAAGAGTGCTTATCTTCAAGGAAACCTTCCCCAAATGCCTCTAAAAAAATATTAGGAATTTTTGCATTAAATAAGCACAAAGGCCTTTTCATGGGCATTTCTTAA

Predicted protein sequences of Glyma18g41760

Limit To All Plant Sequences

>Glyma18g41760.1   sequence type=predicted peptide   gene model=Glyma18g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ILRKGKEKKCIDCIYNDLRRHQMEHQPSYKPVILESEAKPSNDVVEREAEPSNDAVESEAEPSQGAVDSEAEPSNGAVESEAKPSQGAVESEVEPSQDVVESEGELSNGAVNREAEITSGAVESEAKTSSGAVKTETKNDVVNSEAETSSGALQSEKESCVVEGSNQGDEDSRPASDALDGHNVGTKVVKNPFYYLIRVPRYDDDENIKKNIKNALHQVEENQTIKAICKDFDQKFRAAIATHRAARDLLKSKCQEIDSVQSIINILNNVIFVGDIDGKIRSMEHMIEHETLPLNKEKQLIREIKQLKQNCEELSSNMKKQDQSQQSVDNKDDNIEEHFKHLQLLKKEMEVLRNNVLKSDTKTKATKKKYNDECDTLNNPKSKSGNSKYGRAQGASSHTQSKNFVNFDSLQECLSSRKPSPNASKKILGIFALNKHKGLFMGIS*

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