Glyma18g46380 - SoyBase

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Report for Sequence Feature Glyma18g46380

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56134466
stop:	56137750
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01800	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr1:293396-294888 FORWARD LENGTH=295	SoyBase	E_val: 1.00E-130	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1208	KOG	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	JGI		ISS
PTHR24322	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24322:SF19	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_G7KA55	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: (+)-neomenthol dehydrogenase n=1 Tax=Medicago truncatula RepID=G7KA55_MEDTR	SoyBase	E_val: 2.00E-131	ISS
UniRef100_I1N3M6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N3M6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g46380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46380

Paralog	Evidence	Comments
Glyma09g39820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g229700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46380

Limit To All Plant Sequences

>Glyma18g46380.1   sequence type=CDS   gene model=Glyma18g46380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAGCAACAATAAGGAATGCAGTTGTCACGGGAGCAAACAAAGGGATAGGATTTGGAATATGCAAGCAATTGGTTTCTAATGGCATCACAGTGGTGCTAACAGCAAGGGATGAGAAAAGGGGTCTTGAAGCTGTTGAAAAGCTGAAAGAGTTTGGTGTGTCTGATCAAGTGGTGTTTCATCAGCTTGATGTGACTGACCCTAAAAGCATTGAATCCCTTGCAAATTTCATCAAAACCCAGTTTGGAAAACTTGATATCTTGGTGAATAATGCAGGAATTCATGGAGCATATGTTGACCGTGATGCTTTAGCTGCTGCTGGGGAAAAAGTTGCCAATGTTGATTGGAGAAAAATCTCAACTGAAAATTTTGAAGCTGCCGAAGCAGGCATTAGAACAAATTACTATGGAGTCAAATTAATGTGTGAAGCACTTATTCCCCTTCTAGAATTGTCAGGCACACCAAGGATTGTCAATGTTTCCTCCTCCATGGGGAAGTTGGAGAAAATACCAAATGCATGGGCTAGAGGAGCCCTAAGTGATGCTGAGAGCCTAACAGAAGAAAAGGTGGATGAGGTTTTGAATCAGTTTCTAAAAGATTTTAAAGAGGGTTCATTAGAAACCAAAGGGTGGCCACATGCTTTTTCTGCATATATAGTCTCAAAAGCTGCTTTGACTGCCTACACAAGGATTCTTGCTAAGAAGTACCCATCTTTCTGCATCAATGCTGTTTGCCCTGGCTTTGTGAAAACAGATCTCAACTACAATACTGGCTATCTTAGTGTTGATGAAGGTGCTGAAAGTGTTGTAAGGTTGGCTCTGCTACCTAATGGAGGTCCTTCTGGTCTATTCTTTTCTCGAAGTGAAGTGGCACCATTCTGA

Predicted protein sequences of Glyma18g46380

Limit To All Plant Sequences

>Glyma18g46380.1   sequence type=predicted peptide   gene model=Glyma18g46380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASATIRNAVVTGANKGIGFGICKQLVSNGITVVLTARDEKRGLEAVEKLKEFGVSDQVVFHQLDVTDPKSIESLANFIKTQFGKLDILVNNAGIHGAYVDRDALAAAGEKVANVDWRKISTENFEAAEAGIRTNYYGVKLMCEALIPLLELSGTPRIVNVSSSMGKLEKIPNAWARGALSDAESLTEEKVDEVLNQFLKDFKEGSLETKGWPHAFSAYIVSKAALTAYTRILAKKYPSFCINAVCPGFVKTDLNYNTGYLSVDEGAESVVRLALLPNGGPSGLFFSRSEVAPF*

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