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Report for Sequence Feature Glyma18g50790

Feature Type:gene_model
Chromosome:Gm18
Start:59805076
stop:59809455
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G30180AT Annotation by Michelle Graham. TAIR10: brassinosteroid-6-oxidase 2 | chr3:11810867-11813509 FORWARD LENGTH=465 SoyBaseE_val: 0ISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004497GO-mf Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0157 KOG Cytochrome P450 CYP4/CYP19/CYP26 subfamilies JGI ISS
PTHR24286Panther FAMILY NOT NAMED JGI ISS
PTHR24286:SF21Panther JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_I1N4P8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4P8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q69F95UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 85A n=1 Tax=Phaseolus vulgaris RepID=C85A_PHAVU SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g27600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g272300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g50790.1   sequence type=CDS   gene model=Glyma18g50790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTATTCATGGCAGTTCTTGGTGTTGTTGCCTTGGTGCTCTGTTTTTGCTCTGCTCTCTTGAAGTGGAATGAATTGAGGTATAGGAGGAAAGGTTTGCCTCAAGGCACAATGGGGTGGCCTGTTTTTGGGGAGACAACTGAGTTTCTTAAGCAAGGTCCAAGCTTCATGAAGAACAAGAGGGCAAGGTATGGCAGTTTTTTCAAATCCCACATCCTGGGGTGTCCTACCATTGTATCCATGGATCCAGAGCTTAATAGGTACATACTCATGAATGAAGCAAAAGGGCTTGTTCCAGGGTACCCACAATCCATGTTAGATATCTTAGGCACACGCAATATTGCAGCTGTTCATGGCTCCACTCACAAGTACATGAGAGGAGCACTTCTTTCAATCATTAGCCCCACCTTGATCAGAGACCAGCTTTTACCAAAAATTGATGAGTTCATGAGAACCCACTTGAGTGATTGGGATAACAAAGTCATTAACATCCAAGAGAAAACTAAAGAGATGGCATTTCTCTCTTCCCTGAAGCAGATTTCTGGTATGGAATCCAGCTCAATATCCCAACCCTTCATGACAGAGTTCTTTAAACTTGTTTTAGGAACTCTATCTTTGCCTATTAACCTTCCTGGCACAAATTATCGCCGTGGATTGCAGGCAAGAAAGAGTATTGTCAGCATTCTTAGTCAGCTGCTAGAGGAAAGGAAAACATCTCAAAAGGGCCACGTGGACATGCTTGGTTGCTTGATGAATAAAGATGAAAATCGATACAAACTAACTGATGAGGAAATCATTGATCTAATTATTACAATTATGTATTCTGGTTATGAAACTGTTTCAACCACATCAATGATGGCAGTGAAGTACCTCCATGATCATCCCAAAGTTCTTGAAGAAATCAGAAAAGAGCATTTTGCCATTAGGGAAAGGAAAAATCCCGAGGATCCAATTGATTGTAATGATCTCAAGTCAATGAGGTTTACTCGTGCGGTGATTTTTGAGACCTCCAGATTAGCTACGATAGTTAATGGGGTTCTAAGAAAAACAACTCATGACATGGAACTAAACGGCTATTTGATTCCTAAAGGGTGGAGGATATATGTATATACGAGAGAGATCAATTATGATCCATTTCTGTATCATGATCCACTAACATTCAATCCATGGAGATGGCTGGGTAACAGTCTAGAGTCACAAAGCCACTTCTTGATATTTGGAGGAGGGACCAGACAATGTCCAGGGAAGGAGTTGGGGATAGCAGAAATTTCCACTTTCTTACACTACTTTGTAACCAGATACAGGTGGGAAGAAATAGGAGGAGATAAACTGATGAAATTTCCTAGAGTTGTGGCACCAAATGGACTGCACATAAGGGTCTCGTCTAACTAA

>Glyma18g50790.1   sequence type=predicted peptide   gene model=Glyma18g50790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALFMAVLGVVALVLCFCSALLKWNELRYRRKGLPQGTMGWPVFGETTEFLKQGPSFMKNKRARYGSFFKSHILGCPTIVSMDPELNRYILMNEAKGLVPGYPQSMLDILGTRNIAAVHGSTHKYMRGALLSIISPTLIRDQLLPKIDEFMRTHLSDWDNKVINIQEKTKEMAFLSSLKQISGMESSSISQPFMTEFFKLVLGTLSLPINLPGTNYRRGLQARKSIVSILSQLLEERKTSQKGHVDMLGCLMNKDENRYKLTDEEIIDLIITIMYSGYETVSTTSMMAVKYLHDHPKVLEEIRKEHFAIRERKNPEDPIDCNDLKSMRFTRAVIFETSRLATIVNGVLRKTTHDMELNGYLIPKGWRIYVYTREINYDPFLYHDPLTFNPWRWLGNSLESQSHFLIFGGGTRQCPGKELGIAEISTFLHYFVTRYRWEEIGGDKLMKFPRVVAPNGLHIRVSSN*







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