Glyma18g52720 - SoyBase

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Report for Sequence Feature Glyma18g52720

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61235945
stop:	61241335
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04950	AT	Annotation by Michelle Graham. TAIR10: TATA BOX ASSOCIATED FACTOR II 59 \| chr1:1403606-1407184 REVERSE LENGTH=549	SoyBase	E_val: 3.00E-154	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006352	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0051090	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR10221	Panther	TATA BINDING PROTEIN ASSOCIATED FACTOR	JGI		ISS
PF07571	PFAM	Protein of unknown function (DUF1546)	JGI		ISS
UniRef100_G7KXV7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor TFIID subunit n=1 Tax=Medicago truncatula RepID=G7KXV7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DFAB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFAB related cluster n=1 Tax=unknown RepID=UPI000233DFAB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52720

Paralog	Evidence	Comments
Glyma02g10220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g290200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52720

Limit To All Plant Sequences

>Glyma18g52720.2   sequence type=CDS   gene model=Glyma18g52720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGATCATCAAGGCATATTGACCGGCGAACCGTTTGGCAGCTTAATGCTTCAAGATCTATTATTTGTTACTTCTTCCAATTTATCTGTAACTTGTACTCCCCTGCCCCTTTTAAGAATACTTATTTACTTATTATTTTATTTGCAGTAATTTCAGCTCCTTCTGATGTCAAAAAACATGAGCAGAAAGATGATAACCTTCCAGTTGACATCAAATTGCCTGTTAAGCATGTATTATCCAGAGAGCTTCAGCTGTATTTTGACAAAGTGGCCGAGCTTACTTTGAGTGAGTCTGAATCAGTTCTCTTTAAAGAGGCATTAGTAAGTTTGGCTACTGATTCAGGACTTCATCCACTAGTTCCTTATTTCACATGCTTTATAGCTGATGAGGTTTCCCGTGGTTTGAATAATTATCCTCTTCTATTTGCCTTGATGCGAGTTGTTAGTAGCCTTCTGCAAAACCCTCACATCCATATTGAACCATATCTACACCAGTTGATGCCATCTGTTGTGACCTGCCTTGTTGCTAAAAGGTTGGGCAGTAGGTTGGCAGACAACCACTGGGAACTTAGAGACTCTACGGCTAATCTGGTTGCCTCAATATGCAAAAGGTTTGGACATGTTTACAGTAATCTCCAGTCTCGGTTGACAAAAACATTGCTGAATGCATTCTTGGATCCCAAGAAGGCATTGACGCAACACTATGGTGCAATTCAGGGGTTAGGAGCACTGGGTCCCAACGTGGTTCGCCTTCTTTTGCTGCCGAACCTTGAAACATATATGCGACTTCTTGAACCAGAGATGCTTCTTGAGATGCAGAAAAATGAAATGAAAAGGCATGAAGCTTGGCTGGTTTATGGAGCCTTGCTGCGTGCTGCAGGTCAGTGTATATATGATCGACTAAAGATTTTCCCAACTTTTCCATCTCCTCCCCTTCATGCTGTCTGGAAGACCAATGCAAAAGTTCTTACTTCAACTCATAAACGCAAGGCAAGCCCTGAGCAATTGGAACAGCAGCCACCTTTGAAAAAAGCTGCTACGGATGGTGAGATTGGTGTGGACCTAATGAATCACGAGCAAGAGGAGGCAGGGACTCAAGCTTCTTCAGCCGATTCAATAATTGGCTCATCATCATCTAACACACAGATGAAAAATGAGACTACTTTAGATGGAGAAGTTAGAAGTAACGGGGGTGATACTCAGGCATTGAAGACATCTGCTGCTCTCACCCAGGTTTGGAAGGACGAGCTTAACTCAGGACGTACCCTGGTATCACTGTTTGAGTTGTTTGGTGAAGGAATTCTCTCCTTCATTCAGGCTCCTGAGATGTATATGTTCTTGTAA

Predicted protein sequences of Glyma18g52720

Limit To All Plant Sequences

>Glyma18g52720.2   sequence type=predicted peptide   gene model=Glyma18g52720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSSRHIDRRTVWQLNASRSIICYFFQFICNLYSPAPFKNTYLLIILFAVISAPSDVKKHEQKDDNLPVDIKLPVKHVLSRELQLYFDKVAELTLSESESVLFKEALVSLATDSGLHPLVPYFTCFIADEVSRGLNNYPLLFALMRVVSSLLQNPHIHIEPYLHQLMPSVVTCLVAKRLGSRLADNHWELRDSTANLVASICKRFGHVYSNLQSRLTKTLLNAFLDPKKALTQHYGAIQGLGALGPNVVRLLLLPNLETYMRLLEPEMLLEMQKNEMKRHEAWLVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNAKVLTSTHKRKASPEQLEQQPPLKKAATDGEIGVDLMNHEQEEAGTQASSADSIIGSSSSNTQMKNETTLDGEVRSNGGDTQALKTSAALTQVWKDELNSGRTLVSLFELFGEGILSFIQAPEMYMFL*

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