Glyma18g53170 - SoyBase

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Report for Sequence Feature Glyma18g53170

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61503177
stop:	61506170
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g53170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38200	AT	Annotation by Michelle Graham. TAIR10: Class I glutamine amidotransferase-like superfamily protein \| chr5:15256383-15258474 FORWARD LENGTH=436	SoyBase	E_val: 0	ISS
GO:0006541	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutamine metabolic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR11922	Panther	GMP SYNTHASE-RELATED	JGI		ISS
PTHR11922:SF16	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07722	PFAM	Peptidase C26	JGI		ISS
UniRef100_B9RSP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative n=1 Tax=Ricinus communis RepID=B9RSP8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N5A1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N5A1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g53170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g53170

Paralog	Evidence	Comments
Glyma02g09770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g53170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g294300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g53170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g53170

Limit To All Plant Sequences

>Glyma18g53170.1   sequence type=CDS   gene model=Glyma18g53170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACCGATCTCTCTGTCATTCTCCCTCGCGTTCTCATTGTCTCTAGACGAAGCGTTCGCAAAAACAAGTTCGTTGATTTCGTTGGTGAGTATCACCTTGATCTTATAGTAGGGTATGGCGCGGTGCCCGTGATTGTTCCTCGTGTTTCCGGGGTGCACATGTTGTTGGATAGCTTTGAGCCAATCCACGGCGTGCTTCTGTGTGAAGGAGAAGACATTGATCCTTCTTGTTACGAACAAGATACCGCGGGTCTTTCAGAAGAGGAAGTGGAAGAGATTAGAAGGCTTCATGCAAGTGACACGGCCATTGACAAAGAGAAAGACTCAATTGAGTTGAGCCTCGCCAAGCTATGCCTCGAGAGGAACATTCCCTATTTGGGAATCTGCAGGGGCTCACAGATCCTTAATGTTGCATGTGGGGGTACCCTTTATCAGGACATAGGAAAAGAGCTTTCGATTAAGTGCCCTGAGGGCCAAAGGGCTATGCACATAAACTATGATGATTATGATGGGCATAGGCACGATGTGGAAGTGGTTGAAAACACCCCTTTGCATCATTGGTTTAAGGATTCTTTGGAAGAAGGAAAAATGGATATTTGTGTTAATAGCTATCACCATCAAGGGGTGAAGAGATTGGCACAACGTTTTGTGCCAATGGCCTTTGCACCTGATGGTTTGATTGAAGGGTTTTATGACCCAGATGCTTATAATCCAGAAGAGGGTAAGTTCATTATGGGATTACAGTTTCACCCTGAGCGTATGAGGAAGCCTGATTCGGATGAGTTTGATTACCCTGGATGCCCCTTTGCTTATAAGGAATTTGTAAAAGCAGTTGTTGCTTACCAGAAGAAGTTGAACAATTTAGCATCCGTCCAAAAGCCCATTAAGCTTAATAAGGAAATGGAAATCAAAAGGAAGATTATTGTGCGTAGTTTTTCACTTGCCAAAAACCTCTACAACACTGGCCGTGGAACTAATTCCTCCAAACAGACTGAACTCGAAGCTGGAGCAGAATTTCTTGAGTCCAACACAGCTTTGAGTGTGCAACAAGAGAATAGATTAAAACAAATGGGTGCAACGGTTAGGAATGCAGGGTCCTACATAGAGAGACTGAAGCTAAATGAGGAAAGAGAAAAAATGGCTAGAAATCTGATGGGGAAAATGACGGTGGAACAGTTGTCTGATCTCTTGTCTTTTTATCACACCATGGGGCAGATTTGTTCCGAAGTATTGGACATAAAGATACATGGCCTTGTCAATGACTTAGCTTCATGA

Predicted protein sequences of Glyma18g53170

Limit To All Plant Sequences

>Glyma18g53170.1   sequence type=predicted peptide   gene model=Glyma18g53170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTDLSVILPRVLIVSRRSVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVSGVHMLLDSFEPIHGVLLCEGEDIDPSCYEQDTAGLSEEEVEEIRRLHASDTAIDKEKDSIELSLAKLCLERNIPYLGICRGSQILNVACGGTLYQDIGKELSIKCPEGQRAMHINYDDYDGHRHDVEVVENTPLHHWFKDSLEEGKMDICVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDAYNPEEGKFIMGLQFHPERMRKPDSDEFDYPGCPFAYKEFVKAVVAYQKKLNNLASVQKPIKLNKEMEIKRKIIVRSFSLAKNLYNTGRGTNSSKQTELEAGAEFLESNTALSVQQENRLKQMGATVRNAGSYIERLKLNEEREKMARNLMGKMTVEQLSDLLSFYHTMGQICSEVLDIKIHGLVNDLAS*

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