Report for Sequence Feature Glyma19g03140
Feature Type: gene_model
Chromosome: Gm19
Start: 3243757
stop: 3250165
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g03140
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G39420 AT
Annotation by Michelle Graham. TAIR10: CDC2C | chr5:15772232-15774929 FORWARD LENGTH=644
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0009860 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube growth
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG0600
KOG
Cdc2-related protein kinase
JGI ISS
PTHR24056 Panther
CELL DIVISION PROTEIN KINASE
JGI ISS
PTHR24056:SF77 Panther
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
UniRef100_G7KLB8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase n=1 Tax=Medicago truncatula RepID=G7KLB8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233E04B UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E04B related cluster n=1 Tax=unknown RepID=UPI000233E04B
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g03140
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g03140
Paralog Evidence Comments
Glyma13g05710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g03140 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g026200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g03140
Coding sequences of Glyma19g03140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g03140.2 sequence type=CDS gene model=Glyma19g03140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTGCATAAGCTCCAAGAATGCGGTTGCCGGAGCTTGTTCTCCGTCTCCTGCGGTGCTGAACATCGCGGAGGGACATTCCGGGTTGACGGTTCTGGAATCGAAAACAGGGTCAGAGAATGAGAGGAACAACAAGAAGTTGAAGAAGAACAATTCAAAGAGTAGTAGTGGGGGTTTCAGCTTCAGGCTTGGGTTGGCTCCAAAGCATGTGGAGGCTGAACAGAATGCTGCTGGTTGGCCTCCTTGGCTCACAGCTACTGCAGCTGAAGCCATTCAAGGATGGATCCCTCTCAAAGCTGATTCTTTTCAAAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGCTTTGACAATTTCCAACCTGAGAGCATCAGGTTCATGGCAAGAGAAATAACAATCCTTCGTAGGCTTGATCACCCAAATATCATGAAATTGGAAGGCATAATCACTTCTCGCCTCTCAAATAGCATATACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGTCCTGATATTGTGTTCTCCGAATCACAGATAAAATGTTACATGAGACAGCTATTAAGTGGACTTGAGCATTGTCATATGCGTGGCATCATGCACAGAGACATCAAAGTATCAAATATCTTGTTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAACACAAATGGGAAGCATCATTTGACAAGTCGCGTTGTGACTTTGTGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAACTATGGAGTGTCTGTGGATCTGTGGAGTGTTGGCTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCTCCTGAGGACTTCTGGAAAAAGACTAGGCTTCCTCATGCAACAATGTTTAAACCTCAGACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCTGCATCTGCTGTTAATCTACTCGAGACTTTACTGTCGATCGATTCTGGCAACCGAGGGACTGCCTCATCTGCCCTAATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATGCATCAAGCCTGCCGAAGTATCCTCCTAGCAAAGAAATGGATGTAAAAAATATTGAAGATTCATCCAAGAAAAAAACTGGAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGGCAGCAAAGACGAGTCAGTAAAATTTTGCAAGATCCAAACAATTTTGGCAAATCAACTTCAAAAGAGGACATGCAGAACATTTCTCAAAATGCTCGTAGAGATGATGGTAAATCACATCTTACTAAGGGAAAAGGAGGAGCCATGCACAAAGATTATACAAAGCCTCATATGGATGCTATGTCTGAGACCTCCCAAATGAATGTTGCTAATGGTAATGGCTATAGTGTGGGATCTAATAATACCTTTACATGGGTAAAAAGGAGAAAGCAAGATGCTTCATCAACTCTATCAGATGGATCAAGAAGCAAAATTAGTGCACTTGATCCAAACTTTGCAAAAGGAACATATGACTTAACCACACAAAGGGTGTCCATGGATTTTGATCCCGCAGAACTGATGAATGCTCAGGGCGACCGAGGGCGTGCTGTTCGTAAATCAAGATTTGGAAGAGACAACAGATGA
Predicted protein sequences of Glyma19g03140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g03140.2 sequence type=predicted peptide gene model=Glyma19g03140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGCISSKNAVAGACSPSPAVLNIAEGHSGLTVLESKTGSENERNNKKLKKNNSKSSSGGFSFRLGLAPKHVEAEQNAAGWPPWLTATAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFSESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTINTNGKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEDFWKKTRLPHATMFKPQTNYESSLRERCADFPASAVNLLETLLSIDSGNRGTASSALMSEYFSTKPYACNASSLPKYPPSKEMDVKNIEDSSKKKTGGKMREVATSRRQQRRVSKILQDPNNFGKSTSKEDMQNISQNARRDDGKSHLTKGKGGAMHKDYTKPHMDAMSETSQMNVANGNGYSVGSNNTFTWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTTQRVSMDFDPAELMNAQGDRGRAVRKSRFGRDNR*
SoyBase
Follow us on Twitter @SoyBaseDatabase
