Report for Sequence Feature Glyma20g28100
Feature Type: gene_model
Chromosome: Gm20
Start: 37058861
stop: 37060389
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g28100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G19260 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3049) | chr5:6479494-6480360 REVERSE LENGTH=288
SoyBase E_val: 4.00E-28 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF11250 PFAM
Protein of unknown function (DUF3049)
JGI ISS
UniRef100_I1NGB4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGB4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q6NMR8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein FANTASTIC FOUR 3 n=1 Tax=Arabidopsis thaliana RepID=FAF3_ARATH
SoyBase E_val: 2.00E-25 ISS
Expression Patterns of Glyma20g28100
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g28100
Paralog Evidence Comments
Glyma10g39660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g28100 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g143000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g28100
Coding sequences of Glyma20g28100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g28100.1 sequence type=CDS gene model=Glyma20g28100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGCAATTGTGCACCACGGATTGCAGTCACACCTCGAGTCCCAACACGCCGAGTCAATAGCTCTCAAACTGAGGCTCCCTTCCTCAAAACCACCCCTCCCTCAACTCATCGATTTAGCCTTCAAACCCTCCTTCTGGGATTCAAATTCAACCATCAAACCCCACAACGAAGAAAACAACAAGTCCACACCCTCAAACCCCAACTCTTGGAGCTTCCTCGAAGCTCTCTCCAACATCACAAAAGAACCATCACAGAACCAAACCACCTACGTGCACCCTCAGCAGAAACGCTCCTCGCTGAGCCTCAGCCCAAAGAGCCTCCAACTCTGCACCGAAAACCTCGGAAACGAAAGTGGCAGCGACAGTGGCAGTGACAGCGATGAAAACAGCATTGACATGCTTTCTTCATTGAACGGGAATTCGGGGACAAGGGAACAAGCCCAACAAAGGCAACCTCGTCAACTTTCGACAGCGAAGAAAGCGAAAACCCAGAATTTTCCACCCCCTTTGACAACGATAAGGGGATCTGACTCTCTTCGTGTGAGACCCCACCGCGAAGATGGACGGCTAGTAATCGAGGTCACCAAGGTCCCACCTAGTCCCTCGTGCTTTCATGCTGAAAGAAGCCATGGCCGCCTTCGCCTCTGCTTTTTGACAAACCACACTCCAAGTTTTGACACGGAAGCAGCAGAAGATGACGTTGAAGAAAACGAGCCATTTGCCAATGAAAAAGAACTCGAAAACGAAATAAGTGGACAAGTAAAAGATACCAAAGAAGAACACGAGGAAACAGAGAACGAAACAGGGGAAGAAGAAGAAGAAGGGGGGGAGGAGGAATGTGTTGCATGTGGGTATGTGGAGAGTGATGTTATTATCATGGAAAAGTACGAGAGGCTGAGAAGTTGCAACGAAGGTGGTGACCACGAGAACTATGAATTTTTAAATTGGAGTGAGCCACGTTTGGTGGCTACTTCGTAA
Predicted protein sequences of Glyma20g28100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g28100.1 sequence type=predicted peptide gene model=Glyma20g28100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAIVHHGLQSHLESQHAESIALKLRLPSSKPPLPQLIDLAFKPSFWDSNSTIKPHNEENNKSTPSNPNSWSFLEALSNITKEPSQNQTTYVHPQQKRSSLSLSPKSLQLCTENLGNESGSDSGSDSDENSIDMLSSLNGNSGTREQAQQRQPRQLSTAKKAKTQNFPPPLTTIRGSDSLRVRPHREDGRLVIEVTKVPPSPSCFHAERSHGRLRLCFLTNHTPSFDTEAAEDDVEENEPFANEKELENEISGQVKDTKEEHEETENETGEEEEEGGEEECVACGYVESDVIIMEKYERLRSCNEGGDHENYEFLNWSEPRLVATS*
SoyBase
Follow us on Twitter @SoyBaseDatabase
