SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g066600

Feature Type:gene_model
Chromosome:Gm17
Start:5148779
stop:5150706
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.17g066600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57660.1AT ATCOL5,COL5 JGI N/AIEA
GO:0005622GO-cc intracellular anatomical structure JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG1601 KOG GATA-4/5/6 transcription factors JGI N/AIEA
PTHR31319PantherFam ZINC FINGER PROTEIN CONSTANS-LIKE 4 JGI N/AIEA
PF00643Pfam B-box zinc finger JGI N/AIEA
PF06203Pfam CCT motif JGI N/AIEA

Proteins Associated with Glyma.17g066600
LocusGene SymbolProtein Name
COL4b Constans-like 4 gene b

Gene model name correspondences to Glyma.17g066600 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g07420 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g066600
>Glyma.17g066600.1 sequence-type=CDS polypeptide=Glyma.17g066600.1.p locus=Glyma.17g066600 id=Glyma.17g066600.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGGAATTGAAAGAGGAGGCTTCAAGGGATTCAGGAGCGCCTGGAGCGTGCCGCCCAAGCCGTGCGATTCCTGCAAGCTGGCCTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCGTTTCTCTGCATCGCCTGCGATTCCAACATTCACTGCTCGAACAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTGCTGTCACGTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGTGACTCCGACATCCACTCCGCGAACCCCCTCGCGCAACGCCACGAGCGCGTCCCCGTGGAACCTTTCTTTGACTCCGCTGAGTCCATAGTGAAAGCCTCTGCTGCCGCCACCTTCGGGTTCATTGTCCCATCCGACGACGGCGGCGCCTCCGACGCTTTCGCCCCCGATGACTCCGACGCCGCCGCGTGGCTCATCCCGAACCCTAATTTCGGGTCCAAGCTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCAGTTCAAAAACCCTCTCTCGCCCCTCCCCTAATCAATAATCACCACCACCACCAATCAGAAACTTGCTTCGACGTCGATTTTTGTCGCTCGAAGCTCTCCTCCTTTAACTACCCTTCCAATTCTCTTAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACGGTGTCAGACATGTCGTATTCTTTTGGTCGGAACAGTTCGGATTCGAGTGGGATTGTTGTTGTGTCAGGAAATAGTGTGGGGCAAGGTGCGACGCAGTTGTGTGGAATGGATCGGGAAGCGAGGGTACTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTCGAGAAGACAATTCGATACGCATCGCGAAAAGCATATGCGGAAACCCGGCCCAGGATAAAAGGCCGCTTCGCCAAACGAACAGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCCCTGCGGTGCTCATGCTGGACACTCCATACGGCGTCGTACCATCGTTTTAG
Predicted protein sequences of Glyma.17g066600
>Glyma.17g066600.1.p sequence-type=predicted peptide transcript=Glyma.17g066600.1 locus=Glyma.17g066600 id=Glyma.17g066600.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MGIERGGFKGFRSAWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSNIHCSNKLASRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASAAATFGFIVPSDDGGASDAFAPDDSDAAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQKPSLAPPLINNHHHHQSETCFDVDFCRSKLSSFNYPSNSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSDSSGIVVVSGNSVGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGPAVLMLDTPYGVVPSF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo