Glyma09g28030 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma09g28030

Feature Type:	gene_model
Chromosome:	Gm09
Start:	35002668
stop:	35024524
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g28030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51660	AT	Annotation by Michelle Graham. TAIR10: cleavage and polyadenylation specificity factor 160 \| chr5:20980250-20989268 FORWARD LENGTH=1442	SoyBase	E_val: 0	ISS
GO:0006378	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA polyadenylation	SoyBase	N/A	ISS
GO:0006379	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA cleavage	SoyBase	N/A	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1896	KOG	mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit)	JGI		ISS
PTHR10644	Panther	DNA REPAIR/RNA PROCESSING CPSF FAMILY	JGI		ISS
PTHR10644:SF2	Panther	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	JGI		ISS
PF03178	PFAM	CPSF A subunit region	JGI		ISS
UniRef100_B9R9N0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cleavage and polyadenylation specificity factor cpsf, putative n=1 Tax=Ricinus communis RepID=B9R9N0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023388DA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023388DA related cluster n=1 Tax=unknown RepID=UPI00023388DA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g28030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g28030

Paralog	Evidence	Comments
Glyma16g32890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g28030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g153100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g28030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g28030

Limit To All Plant Sequences

>Glyma09g28030.1   sequence type=CDS   gene model=Glyma09g28030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCGCGGCGTACAAGATGATGCAGTGCCCCACCGGCATCGACAACTGCGCCGCCGGCTTCCTCACCCACTCCCGCTCCGACTTCGTTCCTCTCCAGCCCGACGACCTCGACGCTGCCGAGTGGCCCTCCCGCCCCCGCCACCACGTTGGCCCCCTCCCCAACCTCGTCGTCACCGCCGCCAACGTCCTCGAAGTCTACGCGGTCCGCCTCCAGGAGGACCAGCAGCCCAAGGATGCCTCCGACGACTCCCGCCGCGGTACCCTCCTCGACGGCATTGCCGGGGCCTCCCTCGAGCTCGAGTGCCACTACAGGTTGCATGGTAATGTTGAAACCATGGCTGTTTTGAGCATTGGAGGTGGTGATGTTTCTAGGAAGAGAGATTCTATCATCTTAACTTTCGCAGATGCAAAGATTTCAGTTCTTGAGTATGATGATTCTATTCACGGACTTCGTACTAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCAGTGGTAAAGATTGATCCTCAAGGCAGGTGTGGTGGAGTTCTTATCTATGATTTGCAAATGATAATACTAAAGGCTACTCAGGTTGGTTCTGGTTTAGTTGGGGATGATGATGCCTTTGGATCTTCAGGAGCAGTTGCTGCTCGTATTGAGTCATCTTATATGATAAACCTACGTGACTTGGATATGAGGCATGTAAAAGATTTTACGTTTGTTTATGGCTATATTGAACCTGTAATGGTGATTTTGCATGAACGTGAGCTCACTTGGGCTGGGCGTGTCTCATGGACGCATCACACTTGCATGATATCAGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTTCCCCATGATGCATACAAGCTTCTTGCGGTGCCATCGCCAATAGGTGGCGTTCTTGTAATTGGTGCTAACACTATTCATTATCACAGTCAGTCTGCTTCTTGTGCATTGGCCTTGAACAACTATGCTGTTACACTTGACAGTAGTCAAGAGATACCAAGATCAAGTTTCAATGTTGAGCTTGATGCTGCCAATGCAACTTGGTTGTTGAGTGATGTGGCCTTGCTGTCAACAAAAACTGGCGAACTGCTATTGCTTATGCTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACAACAATTGGAAATTCTCTGTTTTTCCTCGCCAGTCGGTTAGGGGACAGTATGCTGGTGCAATTTTCTTGTGGATCAGGTGTTTCCATGATGTCATCCAATCTAAAAGAAGAGGTTGGTGATATTGAAGTAGATGCTCCATCAAAGAGATTGCGGAGGTCACCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGGTCTGCTACAAATAGAACAGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGATTAACGTTGGTCCTTTGAAAGATTTCTCATATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTCTGCGGCAATCAATTCGCCCAGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGTTCTCATAATGCTGATTCTTCTAAGATGGCTGATGACGACGATGAGTATCATGCTTACCTTATTATTAGCTTGGAGGCTCGAACTATGGTACTAGAAACTGCTGATCTTCTTAGTGAGGTTACTGAAAGTGTGGACTATTATGTTCAAGGAAAAACACTTGCTGCAGGGAATTTATTTGGAAGGCGTCGAGTTATCCAAGTCTATGAACGTGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGACGTAAGCTTTGGAGCTTCTAACTCAGAATCTGGTTCTGCATCTGAGAGTGCTATAGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTACTCAGAATGAGTGATGGAAGTATTCGACTTCTGATTGGAGATCCTAGTACCTGCACTATTTCTGTCACTTCTCCAGCTTCATTTGAGAGCTCCAAGGGATCAGTTTCTTCATGTACACTGTACCATGATAAAGGACCCGAGCCTTGGCTGAGGAAAACAAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGCACTGATGGTGCTGCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTTTGATAATGGTAACCTTGAAATATTTGATATCCCCAATTTCAATTGTGTCTTTTCTGTGGAAAATTTTATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGATGAAAGAGGTACTAAAAGATTCTAAACAAGGGGATCGGGATGGAGTGGTCAACCAAGGGAGGAAGGATAATATACCGAATATGAAGGTTGTAGAGTTGGCCATGCAGAGATGGTCTGGGCAGCATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACTATTCTTTGTTACCATGCTTACCTTTATGAAAGTCCAGATGGTACTTCTAAAGTTGAGGATTCCGCATCAGCTGGAGGATCCATTGGCCTTAGTAGTACCAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGCATATCCCAGGGAGGATACCTCAAATGGATCACCTTGTCAACAAATTACTATTTTCAAGAATATTGGTAGTTATCAGGGATTCTTCCTATCAGGGTCAAGACCAGCATGGGTTATGGTGTTGAGGGAACGACTTCGTGTTCATCCACAGCTATGTGATGGATCTATTGTTGCTTTTACCGTCCTTCACAACGTGAACTGCAATCATGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGTCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAAATTCCACTAAAAGCCACACCACACCAAGTAACATACTTTGCGGAGAAGAACTTATATCCACTTATTGTCTCATTCCCTGTTCTTAAGCCACTAAATCAAGTTATTTCTCTGGTTGACCAAGATTTCAACCATCAAAATGAGAGTCAGAATATGAATCCTGATGAGCAAAACCGCTTTTATCCTATTGATGAATTTGAGGTTCGTATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAGGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTTACTGTGAGGATGGTTACTTTACTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGTACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGTATCCTCTTGTTCTCTTTGGGGAAAATTACTGATAATCCACAAACTCTGGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAAGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGACGCACCGCCATTACATGTTGTGAGCTTAAACATTGTAAAGAACTTCATCCTTATTGGCGATATCCATAAAAGCATATACTTTCTTAGTTGGAAAGAGCAGGGTGCTCAATTGAGCTTATTAGCCAAGGATTTTGGTTCTCTCGATTGTTTTGCGACGGAATTTTTGATTGATGGAAGTACTCTTAGTCTCATGGTTTCAGATGATAATAGAAACATCCAGATTTTTTACTATGCACCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCCCATGTGACTAAATTCTTAAGGTTGCAAATGCTATCCACTTCGGATAGAGCTGGTTCAGTTCCAGGCTCAGATAAAACCAATCGTTTTGCCTTATTATTTGGTACCTTGGATGGAAGTATTGGTTGCATTGCACCTCTTGATGAAATCACATTTCGCAGACTGCAGTCTTTGCAGAGAAAACTTGTTGATGCTGTACCCCATGTTGCTGGCCTGAACCCCAGAGCTTTCAGATTATTTCGGTCAAATGGAAAGGCCCATCGGCCAGGCCCTGACAGTATAGTTGATTGCGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTAACCAGATTGGAACAACTCGATCACAAATTCTGTCAAATCTAAGCGATCTGTCTCTTGGAACAAGCTTCTTGTGA

Predicted protein sequences of Glyma09g28030

Limit To All Plant Sequences

>Glyma09g28030.1   sequence type=predicted peptide   gene model=Glyma09g28030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFAAYKMMQCPTGIDNCAAGFLTHSRSDFVPLQPDDLDAAEWPSRPRHHVGPLPNLVVTAANVLEVYAVRLQEDQQPKDASDDSRRGTLLDGIAGASLELECHYRLHGNVETMAVLSIGGGDVSRKRDSIILTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKIDPQGRCGGVLIYDLQMIILKATQVGSGLVGDDDAFGSSGAVAARIESSYMINLRDLDMRHVKDFTFVYGYIEPVMVILHERELTWAGRVSWTHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNNYAVTLDSSQEIPRSSFNVELDAANATWLLSDVALLSTKTGELLLLMLVYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSGVSMMSSNLKEEVGDIEVDAPSKRLRRSPSDALQDMVSGEELSLYGSATNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKMADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESGSASESAIALSVSIADPFVLLRMSDGSIRLLIGDPSTCTISVTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEIFDIPNFNCVFSVENFMSGKSHLVDALMKEVLKDSKQGDRDGVVNQGRKDNIPNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSASAGGSIGLSSTNVSRLRNLRFVRVPLDAYPREDTSNGSPCQQITIFKNIGSYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDFNHQNESQNMNPDEQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKITDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDNRNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGSVPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPRAFRLFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIANQIGTTRSQILSNLSDLSLGTSFL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain