Number of germplasm analyzed | 373 |
---|---|
Number of loci tested | 42,509 |
Platform name | SoySNP50K |
Platform details | Illumina Infinium SoySNP50K iSelect SNP Beadchip |
Genome-Wide Association Mapping of Carbon Isotope and Oxygen Isotope Ratios in Diverse Soybean Genotypes
(Kaler et al. 2017b)
Crop Sci. 2017, 57:3085-3100
10.2135/cropsci2017.03.0160
SoyBase | SOY:0001313 |
---|---|
GO | GO:0010148 |
PO | PO:0000003 |
TO | TO:0001017 |
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | Associated locus | p-value | Candidate gene | Chromosome | Linkage Group |
---|---|---|---|---|---|---|
WUE 2-g1 | Carbon isotope ratio | ss715579430 | 3.9E4 | Glyma01g04630 | Gm01 | D1a |
WUE 2-g2 | Carbon isotope ratio | ss715582801 | 1.0E6 | Glyma02g05595 | Gm02 | D1b |
WUE 2-g3 | Carbon isotope ratio | ss715580894 | 6.6E5 | Glyma02g11800 | Gm02 | D1b |
WUE 2-g4 | Carbon isotope ratio | ss715582359 | 5.3E4 | Glyma02g36753 | Gm02 | D1b |
WUE 2-g5 | Carbon isotope ratio | ss715582706 | 3.8E4 | Glyma02g38790 | Gm02 | D1b |
WUE 2-g6 | Carbon isotope ratio | ss715582890 | 4.6E4 | Glyma02g40340 | Gm02 | D1b |
WUE 2-g7 | Carbon isotope ratio | ss715582944 | 4.8E8 | Glyma02g40863 | Gm02 | D1b |
WUE 2-g8 | Carbon isotope ratio | ss715584746 | 5.7E4 | Glyma03g16660 | Gm03 | N |
WUE 2-g9 | Carbon isotope ratio | ss715587339 | 1.1E4 | Glyma04g02840 | Gm04 | C1 |
WUE 2-g10 | Carbon isotope ratio | ss715589508 | 3.9E3 | Glyma04g10520 | Gm04 | C1 |
WUE 2-g11 | Carbon isotope ratio | ss715588669 | 1.9E6 | Glyma04g39850 | Gm04 | C1 |
WUE 2-g12 | Carbon isotope ratio | ss715588823 | 1.0E6 | Glyma04g41150 | Gm04 | C1 |
WUE 2-g13 | Carbon isotope ratio | ss715591885 | 1.2E4 | Glyma05g36110 | Gm05 | A1 |
WUE 2-g14 | Carbon isotope ratio | ss715592204 | 1.4E4 | Glyma05g38130 | Gm05 | A1 |
WUE 2-g15 | Carbon isotope ratio | ss715593478 | 6.6E5 | Glyma06g02400 | Gm06 | C2 |
WUE 2-g16 | Carbon isotope ratio | ss715595695 | 4.7E6 | Glyma06g12586 | Gm06 | C2 |
WUE 2-g17 | Carbon isotope ratio | ss715598752 | 7.2E4 | Glyma07g01270 | Gm07 | M |
WUE 2-g18 | Carbon isotope ratio | ss715599042 | 1.8E5 | Glyma07g01470 | Gm07 | M |
WUE 2-g19 | Carbon isotope ratio | ss715597447 | 1.1E4 | Glyma07g31700 | Gm07 | M |
WUE 2-g20 | Carbon isotope ratio | ss715605464 | 4.3E3 | Glyma09g01501 | Gm09 | K |
WUE 2-g21 | Carbon isotope ratio | ss715603235 | 3.1E3 | Glyma09g02800 | Gm09 | K |
WUE 2-g22 | Carbon isotope ratio | ss715603246 | 3.1E3 | Glyma09g02860 | Gm09 | K |
WUE 2-g23 | Carbon isotope ratio | ss715603692 | 2.8E6 | Glyma09g04640 | Gm09 | K |
WUE 2-g24 | Carbon isotope ratio | ss715605385 | 1.7E4 | Glyma09g08300 | Gm09 | K |
WUE 2-g25 | Carbon isotope ratio | ss715608065 | 3.8E4 | Glyma10g42360 | Gm10 | O |
WUE 2-g26 | Carbon isotope ratio | ss715611189 | 5.4E5 | Glyma11g11350 | Gm11 | B1 |
WUE 2-g27 | Carbon isotope ratio | ss715611203 | 5.8E4 | Glyma11g11410 | Gm11 | B1 |
WUE 2-g28 | Carbon isotope ratio | ss715614983 | 2.8E6 | Glyma13g26040 | Gm13 | F |
WUE 2-g29 | Carbon isotope ratio | ss715615278 | 2.4E7 | Glyma13g27970 | Gm13 | F |
WUE 2-g30 | Carbon isotope ratio | ss715618209 | 2.4E4 | Glyma15g02531 | Gm14 | B2 |
WUE 2-g31 | Carbon isotope ratio | ss715621121 | 9.7E6 | Glyma15g02690 | Gm15 | E |
WUE 2-g32 | Carbon isotope ratio | ss715621159 | 1.6E4 | Glyma15g03850 | Gm15 | E |
WUE 2-g33 | Carbon isotope ratio | ss715621444 | 1.1E5 | Glyma15g10620 | Gm15 | E |
WUE 2-g34 | Carbon isotope ratio | ss715623062 | 3.5E5 | Glyma15g12370 | Gm15 | E |
WUE 2-g35 | Carbon isotope ratio | ss715623207 | 2.3E5 | Glyma16g01780 | Gm15 | E |
WUE 2-g36 | Carbon isotope ratio | ss715623427 | 3.4E3 | Glyma16g27380 | Gm16 | J |
WUE 2-g37 | Carbon isotope ratio | ss715624450 | 7.5E5 | Glyma16g33710 | Gm16 | J |
WUE 2-g38 | Carbon isotope ratio | ss715624931 | 3.6E3 | Glyma17g07440 | Gm16 | J |
WUE 2-g39 | Carbon isotope ratio | ss715628013 | 4.7E6 | Glyma17g11910 | Gm17 | D2 |
WUE 2-g40 | Carbon isotope ratio | ss715628319 | 9.7E3 | Glyma17g14530 | Gm17 | D2 |
WUE 2-g41 | Carbon isotope ratio | ss715625747 | 2.1E4 | Glyma17g16870 | Gm17 | D2 |
WUE 2-g42 | Carbon isotope ratio | ss715626097 | 1.2E4 | Glyma17g17550 | Gm17 | D2 |
WUE 2-g43 | Carbon isotope ratio | ss715626210 | 1.6E4 | Glyma17g20290 | Gm17 | D2 |
WUE 2-g44 | Carbon isotope ratio | ss715626630 | 3.5E4 | Glyma17g27370 | Gm17 | D2 |
WUE 2-g45 | Carbon isotope ratio | ss715626831 | 3.3E4 | Glyma17g32061 | Gm17 | D2 |
WUE 2-g46 | Carbon isotope ratio | ss715627051 | 1.3E4 | Glyma17g33100 | Gm17 | D2 |
WUE 2-g47 | Carbon isotope ratio | ss715632594 | 2.7E4 | Glyma18g01340 | Gm18 | G |
WUE 2-g48 | Carbon isotope ratio | ss715628612 | 7.2E3 | Glyma18g12600 | Gm18 | G |
WUE 2-g49 | Carbon isotope ratio | ss715631898 | 5.3E6 | Glyma18g48220 | Gm18 | G |
WUE 2-g50 | Carbon isotope ratio | ss715633033 | 1.2E6 | Glyma19g01420 | Gm19 | L |
WUE 2-g51 | Carbon isotope ratio | ss715636187 | 7.5E3 | Glyma19g06080 | Gm19 | L |
WUE 2-g52 | Carbon isotope ratio | ss715637331 | 3.0E5 | Glyma20g03395 | Gm20 | I |
WUE 2-g53 | Carbon isotope ratio | ss715637883 | 1.4E5 | Glyma20g27550 | Gm20 | I |
WUE 2-g54 | Carbon isotope ratio | ss715638590 | 3.8E3 | Glyma20g35570 | Gm20 | I |
WUE 2-g55 | Oxygen isotope ratio | ss715579733 | 2.9E3 | Glyma01g00820 | Gm01 | D1a |
WUE 2-g56.1 | Oxygen isotope ratio | ss715582161 | 1.2E4 | Glyma02g35380 | Gm02 | D1b |
WUE 2-g56.2 | Oxygen isotope ratio | ss715582162 | 1.6E4 | Glyma02g35400 | Gm02 | D1b |
WUE 2-g56.3 | Oxygen isotope ratio | ss715582164 | 8.3E3 | Glyma02g35443 | Gm02 | D1b |
WUE 2-g57 | Oxygen isotope ratio | ss715582166 | 5.8E3 | Glyma02g35443 | Gm02 | D1b |
WUE 2-g58 | Oxygen isotope ratio | ss715582171 | 3.8E3 | Glyma02g35450 | Gm02 | D1b |
WUE 2-g59.1 | Oxygen isotope ratio | ss715583378 | 5.4E3 | Glyma02g46330 | Gm02 | D1b |
WUE 2-g59.2 | Oxygen isotope ratio | ss715583381 | 5.8E3 | Glyma02g46330 | Gm02 | D1b |
WUE 2-g60 | Oxygen isotope ratio | ss715584347 | 3.9E3 | Glyma03g09050 | Gm03 | N |
WUE 2-g61 | Oxygen isotope ratio | ss715584350 | 3.5E3 | Glyma03g09080 | Gm03 | N |
WUE 2-g62 | Oxygen isotope ratio | ss715588095 | 9.1E3 | Glyma04g35190 | Gm04 | C1 |
WUE 2-g63 | Oxygen isotope ratio | ss715592509 | 3.4E3 | Glyma05g08200 | Gm05 | A1 |
WUE 2-g64 | Oxygen isotope ratio | ss715590791 | 5.0E3 | Glyma05g26710 | Gm05 | A1 |
WUE 2-g65.1 | Oxygen isotope ratio | ss715593777 | 5.0E4 | Glyma06g21280 | Gm06 | C2 |
WUE 2-g65.2 | Oxygen isotope ratio | ss715593778 | 5.0E4 | Glyma06g21280 | Gm06 | C2 |
WUE 2-g65.3 | Oxygen isotope ratio | ss715593779 | 1.4E4 | Glyma06g21320 | Gm06 | C2 |
WUE 2-g65.4 | Oxygen isotope ratio | ss715593780 | 1.4E4 | Glyma06g21350 | Gm06 | C2 |
WUE 2-g65.5 | Oxygen isotope ratio | ss715593781 | 3.3E4 | Glyma06g21383 | Gm06 | C2 |
WUE 2-g66 | Oxygen isotope ratio | ss715593786 | 1.9E4 | Glyma06g21510 | Gm06 | C2 |
WUE 2-g67 | Oxygen isotope ratio | ss715593793 | 1.6E4 | Glyma06g21770 | Gm06 | C2 |
WUE 2-g68 | Oxygen isotope ratio | ss715593810 | 5.2E3 | Glyma06g22160 | Gm06 | C2 |
WUE 2-g69 | Oxygen isotope ratio | ss715593814 | 2.5E4 | Glyma06g22250 | Gm06 | C2 |
WUE 2-g70.1 | Oxygen isotope ratio | ss715593820 | 1.6E4 | Glyma06g22440 | Gm06 | C2 |
WUE 2-g70.2 | Oxygen isotope ratio | ss715593822 | 1.9E4 | Glyma06g22440 | Gm06 | C2 |
WUE 2-g71 | Oxygen isotope ratio | ss715593829 | 4.5E3 | Glyma06g22771 | Gm06 | C2 |
WUE 2-g72 | Oxygen isotope ratio | ss715593831 | 2.5E4 | Glyma06g22804 | Gm06 | C2 |
WUE 2-g73 | Oxygen isotope ratio | ss715598280 | 3.0E4 | Glyma07g06240 | Gm07 | M |
WUE 2-g74 | Oxygen isotope ratio | ss715596496 | 3.0E4 | Glyma07g16260 | Gm07 | M |
WUE 2-g75 | Oxygen isotope ratio | ss715596547 | 8.3E3 | Glyma07g16690 | Gm07 | M |
WUE 2-g76 | Oxygen isotope ratio | ss715597538 | 4.5E3 | Glyma07g32283 | Gm07 | M |
WUE 2-g77.1 | Oxygen isotope ratio | ss715605414 | 3.3E4 | Glyma09g01330 | Gm09 | K |
WUE 2-g77.2 | Oxygen isotope ratio | ss715605417 | 3.3E4 | Glyma09g01330 | Gm09 | K |
WUE 2-g78 | Oxygen isotope ratio | ss715605426 | 3.3E4 | Glyma09g01380 | Gm09 | K |
WUE 2-g79 | Oxygen isotope ratio | ss715605451 | 1.0E4 | Glyma09g01446 | Gm09 | K |
WUE 2-g80 | Oxygen isotope ratio | ss715605482 | 5.2E3 | Glyma09g01556 | Gm09 | K |
WUE 2-g81 | Oxygen isotope ratio | ss715603084 | 6.6E3 | Glyma09g13480 | Gm09 | K |
WUE 2-g82 | Oxygen isotope ratio | ss715620587 | 4.1E3 | Glyma15g17060 | Gm15 | E |
WUE 2-g83.1 | Oxygen isotope ratio | ss715628212 | 3.3E3 | Glyma17g10780 | Gm17 | D2 |
WUE 2-g83.2 | Oxygen isotope ratio | ss715628213 | 8.3E3 | Glyma17g10820 | Gm17 | D2 |
WUE 2-g83.3 | Oxygen isotope ratio | ss715628214 | 3.8E3 | Glyma17g10820 | Gm17 | D2 |
WUE 2-g84 | Oxygen isotope ratio | ss715631240 | 5.0E4 | Glyma18g42530 | Gm18 | G |
WUE 2-g85 | Oxygen isotope ratio | ss715631406 | 2.8E3 | Glyma18g43510 | Gm18 | G |
WUE 2-g86 | Oxygen isotope ratio | ss715636181 | 3.3E3 | Glyma19g05900 | Gm19 | L |
WUE 2-g87 | Oxygen isotope ratio | ss715636462 | 3.9E3 | Glyma19g07320 | Gm19 | L |
WUE 2-g88 | Oxygen isotope ratio | ss715636819 | 2.9E3 | Gm20 | I | |
WUE 2-g89 | Oxygen isotope ratio | ss715637488 | 1.1E4 | Glyma20g23960 | Gm20 | I |
WUE 2-g90 | Oxygen isotope ratio | ss715593775 | 5.0E4 | Glyma06g21240 | Gm06 | C2 |
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||