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Integrating Genetics and Genomics to Advance Soybean Research

Genome Methylation Explorer

Selecting by Experiment     

This page has the genome methylation samples grouped by experiment. Use the check boxes below to select genome methylation samples for display in the SoyBase genome browser.
An alternative selection page with the samples grouped by tissue is available here.

Samples chosen below are added to a shopping basket which will be used to configure the view in the SoyBase genome browser. You can return to this page at any time to add additional samples to the shopping basket. The shopping basket is retained between sessions so be sure to clear it’s contents before collecting samples for a new genome view.

A selection page for adding and viewing gene expression data along with genome methylation data is available here. Note that the Gene Expression Explorer and Genome Methylation Explorer picker pages share a common shopping basket. This allows both types of genome annotation tracks to be simultaneously viewed in the SoyBase genome browser.

This page shows the genome methylation data at SoyBase organized by Experiment. Use the check box to choose one or more Experiments for further analysis, then click on the ‘Proceed to the Next Step’ button at the top right of the page.

To facilitate searching, genome methylation projects at SoyBase have been classified as either Descriptive or Comparative.

  • Comparative
    Genome methylation in the same tissue or structure under different biotic or abiotic treatments, at different developmental stages, or in different cultivars
The Experiment title is a link to an expanded summary of the experiment.
The link within the square brackets, eg. [GeneChip], will open the experiment’s page at GEO.

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
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