Number of germplasm analyzed | 309 |
---|---|
Number of loci tested | 31,045 |
Platform name | SoySNP50K |
Platform details | Illumina Infinium SoySNP50K BeadChip |
Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm
(Zhang et al. 2015a)
BMC Genomics 2015, 16:217
10.1186/s12864-015-1441-4
SoyBase | SOY:0001640 |
---|---|
PO | PO:0009046 |
TO | TO:0000369 |
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | Associated locus | p-value | Candidate gene | Chromosome | Linkage Group |
---|---|---|---|---|---|---|
First flower 7-g1 | DTF | ss715580093 | 4.50E-05 | Glyma01g37980 | Gm01 | D1a |
First flower 7-g2 | DTF | ss715582789 | 1.90E-04 | Glyma02g05580 | Gm02 | D1b |
First flower 7-g3 | DTF | ss715595388 | 1.50E-07 | Glyma06g08270 | Gm06 | C2 |
First flower 7-g4 | DTF | ss715593623 | 3.20E-05 | Glyma06g20310 | Gm06 | C2 |
First flower 7-g5 | DTF | ss715594028 | 4.40E-05 | Gm06 | C2 | |
First flower 7-g6 | DTF | ss715598422 | 7.10E-05 | Gm07 | M | |
First flower 7-g7 | DTF | ss715598611 | 1.70E-04 | Glyma07g08890, Glyma07g08831 | Gm07 | M |
First flower 7-g8 | DTF | ss715595840 | 4.30E-05 | Gm07 | M | |
First flower 7-g9 | DTF | ss715597834 | 2.10E-04 | Gm07 | M | |
First flower 7-g10 | DTF | ss715599973 | 3.60E-05 | Gm08 | A2 | |
First flower 7-g11 | DTF | ss715602265 | 4.80E-05 | Glyma08g44640, Glyma08g44650 | Gm08 | A2 |
First flower 7-g12 | DTF | ss715602298 | 5.60E-06 | Gm08 | A2 | |
First flower 7-g13 | DTF | ss715602313 | 5.20E-05 | Glyma08g45680 | Gm08 | A2 |
First flower 7-g14 | DTF | ss715604771 | 5.40E-05 | Gm09 | K | |
First flower 7-g15 | DTF | ss715605256 | 1.90E-04 | Gm09 | K | |
First flower 7-g16 | DTF | ss715605368 | 2.10E-05 | Glyma09g07980 | Gm09 | K |
First flower 7-g17 | DTF | ss715609022 | 2.00E-04 | Glyma11g02230 | Gm11 | B1 |
First flower 7-g18 | DTF | ss715609443 | 2.10E-06 | Glyma11g20470 | Gm11 | B1 |
First flower 7-g19 | DTF | ss715616244 | 8.50E-05 | Glyma13g38975 | Gm13 | F |
First flower 7-g20 | DTF | ss715618221 | 9.20E-05 | Gm14 | B2 | |
First flower 7-g21 | DTF | ss715619036 | 2.80E-05 | Glyma14g36221 | Gm14 | B2 |
First flower 7-g22 | DTF | ss715630848 | 1.3E-05 | Gm18 | G | |
First flower 7-g23 | DTF | ss715632359 | 1.40E-06 | Gm18 | G | |
First flower 7-g24 | DTF | ss715635043 | 6.90E-05 | Gm19 | L | |
First flower 7-g25 | DTF | ss715637153 | 3.70E-05 | Glyma20g00440 | Gm20 | I |
First flower 7-g26 | DTF | ss715637021 | 1.60E-06 | Glyma20g16880 | Gm20 | I |
First flower 7-g27 | DTF | ss715637130 | 5.50E-08 | Gm20 | I | |
First flower 7-g28 | DTF | ss715637162 | 5.50E-08 | Gm20 | I | |
First flower 7-g29 | DTF | ss715637211 | 9.10E-08 | Gm20 | I | |
First flower 7-g30 | DTF | ss715637240 | 9.70E-08 | Glyma20g21082 | Gm20 | I |
First flower 7-g31 | DTF | ss715638945 | 5.6E-05 | LOC100812369 | Gm20 | I |
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||