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GWAS Report for Seed isoflavone 1
Experimental Details
Number of germplasm analyzed | 366 |
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Number of loci tested | 116769 |
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Publication for This Experiment
Detecting the QTL-allele system of seed isoflavone content in Chinese soybean landrace population for optimal cross design and gene system exploration
(Meng et al. 2016a)
Thor Appl Genet. 2016, 129(8)1557-1576
10.1007/s00122-016-2724-0
Controlled vocabulary terms associated with the QTL Family
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | Associated locus | R2 | p-value | Candidate gene | Chromosome | Linkage Group |
Seed isoflavone 1-g1 | qSifc-a-01-1 | Gm01_BLOCK159 | 0.7 | 3.36E-05 | Glyma01g16250, Glyma01g16370 | Gm01 | D1a |
Seed isoflavone 1-g2 | qSifc-a-01-2 | Gm01_BLOCK329 | 0.5 | 0.000553084 | Glyma01g36091, Glyma01g36110 | Gm01 | D1a |
Seed isoflavone 1-g3 | qSifc-a-02-1 | Gm02_7555638 | 0.3 | 0.007446583 | | Gm02 | D1b |
Seed isoflavone 1-g4 | qSifc-a-02-2 | Gm02_9665788 | 2.9 | 8.62E-21 | Glyma02g11480 | Gm02 | D1b |
Seed isoflavone 1-g5 | qSifc-a-02-3 | Gm02_15308691 | 3.1 | 1.29E-22 | Glyma02g16960 | Gm02 | D1b |
Seed isoflavone 1-g6 | qSifc-a-02-4 | Gm02_BLOCK204 | 6.4 | 1.83E-41 | Glyma02g22730 | Gm02 | D1b |
Seed isoflavone 1-g7 | qSifc-a-02-5 | Gm02_BLOCK267 | 2.9 | 4.27E-20 | Glyma02g29564 | Gm02 | D1b |
Seed isoflavone 1-g8 | qSifc-a-03-1 | Gm03_2279362 | 0.5 | 0.000111666 | Glyma03g02500 | Gm03 | N |
Seed isoflavone 1-g9 | qSifc-a-03-2 | Gm03_BLOCK51 | 0.3 | 0.022370772 | Glyma03g04670 | Gm03 | N |
Seed isoflavone 1-g10 | qSifc-a-03-3 | Gm03_BLOCK135 | 0.7 | 0.000675539 | | Gm03 | N |
Seed isoflavone 1-g11 | qSifc-a-03-4 | Gm03_BLOCK187 | 0.9 | 0.00012341 | Glyma03g17920 | Gm03 | N |
Seed isoflavone 1-g12 | qSifc-a-03-5 | Gm03_BLOCK231 | 8.2 | 2.30E-51 | Glyma03g22740 | Gm03 | N |
Seed isoflavone 1-g13 | qSifc-a-03-6 | Gm03_BLOCK281 | 0.6 | 0.000335463 | Glyma03g27970, Glyma03g28000 | Gm03 | N |
Seed isoflavone 1-g14 | qSifc-a-03-7 | Gm03_BLOCK286 | 2.8 | 3.49E-19 | Glyma03g28271, Glyma03g28310 | Gm03 | N |
Seed isoflavone 1-g15 | qSifc-a-04-1 | Gm04_3377494 | 0.7 | 2.05E-06 | Glyma04g04521 | Gm04 | C1 |
Seed isoflavone 1-g16 | qSifc-a-04-2 | Gm04_BLOCK77 | 1.8 | 1.87E-11 | Glyma04g10301, Glyma04g10330, Glyma04g10375, Glyma04g10451 | Gm04 | C1 |
Seed isoflavone 1-g17 | qSifc-a-04-3 | Gm04_BLOCK106 | 1.9 | 3.78E-12 | Glyma04g12040 | Gm04 | C1 |
Seed isoflavone 1-g18 | qSifc-a-04-4 | Gm04_BLOCK202 | 0.4 | 0.004086771 | Glyma04g20850 | Gm04 | C1 |
Seed isoflavone 1-g19 | qSifc-a-04-5 | Gm04_47568317 | 2.1 | 1.89E-15 | Glyma04g41710, Glyma04g41730 | Gm04 | C1 |
Seed isoflavone 1-g20 | qSifc-a-05-1 | Gm05_BLOCK67 | 0.6 | 0.000370744 | Glyma05g19920 | Gm05 | A1 |
Seed isoflavone 1-g21 | qSifc-a-05-2 | Gm05_BLOCK190 | 4.6 | 9.80E-32 | Glyma05g34140 | Gm05 | A1 |
Seed isoflavone 1-g22 | qSifc-a-05-3 | Gm05_BLOCK213 | 2 | 1.54E-13 | Glyma05g37905, Glyma05g37960 | Gm05 | A1 |
Seed isoflavone 1-g23 | qSifc-a-06-1 | Gm06_29614031 | 0.2 | 0.022370772 | Glyma06g30590 | Gm06 | C2 |
Seed isoflavone 1-g24 | qSifc-a-08-1 | Gm08_BLOCK10 | 1.2 | 2.28E-09 | Glyma08g02940, Glyma08g02970 | Gm08 | A2 |
Seed isoflavone 1-g25 | qSifc-a-08-2 | Gm08_BLOCK107 | 0.4 | 0.006737947 | Glyma08g20320, Glyma08g20341 | Gm08 | A2 |
Seed isoflavone 1-g26 | qSifc-a-09-1 | Gm09_BLOCK243 | 0.6 | 0.000675539 | Glyma09g24431, Glyma09g24440 | Gm09 | K |
Seed isoflavone 1-g27 | qSifc-a-09-2 | Gm09_BLOCK276 | 1.1 | 1.52E-07 | Glyma09g27940, Glyma09g28030 | Gm09 | K |
Seed isoflavone 1-g28 | qSifc-a-10-1 | Gm10_BLOCK181 | 0.8 | 1.01E-05 | | Gm10 | O |
Seed isoflavone 1-g29 | qSifc-a-10-2 | Gm10_46060044 | 0.4 | 0.000675539 | Glyma10g38255 | Gm10 | O |
Seed isoflavone 1-g30 | qSifc-a-10-3 | Gm10_BLOCK381 | 1.8 | 5.65E-12 | Glyma10g42020 | Gm10 | O |
Seed isoflavone 1-g31 | qSifc-a-12-1 | Gm12_24806866 | 0.6 | 1.37E-05 | | Gm12 | H |
Seed isoflavone 1-g32 | qSifc-a-13-1 | Gm13_35947620 | 0.6 | 2.25E-05 | | Gm13 | F |
Seed isoflavone 1-g33 | qSifc-a-14-1 | Gm14_14739875 | 3.4 | 2.14E-24 | | Gm14 | B2 |
Seed isoflavone 1-g34 | qSifc-a-15-1 | Gm15_BLOCK78 | 1.4 | 3.41E-10 | Glyma15g15200 | Gm15 | E |
Seed isoflavone 1-g35 | qSifc-a-15-2 | Gm15_BLOCK375 | 1.1 | 3.06E-07 | Glyma15g41040, Glyma15g41130 | Gm15 | E |
Seed isoflavone 1-g36 | qSifc-a-18-1 | Gm18_BLOCK368 | 5.5 | 1.09E-34 | Glyma18g38610, Glyma18g38700 | Gm18 | G |
Seed isoflavone 1-g37 | qSifc-a-18-2 | Gm18_56138428 | 0.6 | 2.04E-05 | Glyma18g46380 | Gm18 | G |
Seed isoflavone 1-g38 | qSifc-a-18-3 | Gm18_57350313 | 2 | 3.45E-15 | Glyma18g47780 | Gm18 | G |
Seed isoflavone 1-g39 | qSifc-a-18-4 | Gm18_61020284 | 0.2 | 0.013568559 | Glyma18g52410, Glyma18g52440 | Gm18 | G |
Seed isoflavone 1-g40 | qSifc-a-19-1 | Gm19_BLOCK23 | 2.4 | 6.31E-16 | Glyma19g03131, Glyma19g03140 | Gm19 | L |
Seed isoflavone 1-g41 | qSifc-a-20-1 | Gm20_14431547 | 1 | 2.78E-08 | | Gm20 | I |
Seed isoflavone 1-g42 | qSifc-a-20-2 | Gm20_BLOCK102 | 1 | 1.02E-06 | Glyma20g14980, Glyma20g14970 | Gm20 | I |
Seed isoflavone 1-g43 | qSifc-a-20-3 | Gm20_26093114 | 0.4 | 0.001113775 | Glyma20g18450 | Gm20 | I |
Seed isoflavone 1-g44 | qSifc-a-20-4 | Gm20_BLOCK245 | 0.5 | 0.000452827 | Glyma20g28100 | Gm20 | I |
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